RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 CACNB4O00305 520 aaPredicted RBP9.02□□□□□ -0.96
COMMD3-215ENST00000602574 TAF5LO75529 589 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 RBBP9O75884 186 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 GH2P01242 217 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 HNRNPCL4P0DMR1 293 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 SEPHS1P49903 392 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 YWHAEP62258 255 aaKnown RBP9.02□□□□□ -0.96
COMMD3-215ENST00000602574 MLLT1Q03111 559 aaPredicted RBP9.02□□□□□ -0.96
COMMD3-215ENST00000602574 PCDH1Q08174 1060 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 VAC14Q08AM6 782 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 MGAT3Q09327 533 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 BFSP1Q12934 665 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 BNIP3Q12983 259 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 NR1H3Q13133 447 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 LAMC2Q13753 1193 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 ZNF568Q3ZCX4 644 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 FBXO48Q5FWF7 155 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 FAM47CQ5HY64 1035 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 SLC9A4Q6AI14 798 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 RNF180Q86T96 592 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 MTDHQ86UE4 582 aaKnown RBP9.02□□□□□ -0.96
COMMD3-215ENST00000602574 OR4D10Q8NGI6 311 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 OR8K5Q8NH50 307 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 SLC10A4Q96EP9 437 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 SH3YL1Q96HL8 342 aaPredicted RBP9.02□□□□□ -0.96
COMMD3-215ENST00000602574 CNPY3Q9BT09 278 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 TRAF4Q9BUZ4 470 aaPredicted RBP9.02□□□□□ -0.96
COMMD3-215ENST00000602574 ZCCHC2Q9C0B9 1178 aaKnown RBP9.02□□□□□ -0.96
COMMD3-215ENST00000602574 GPN2Q9H9Y4 310 aaPredicted RBP9.02□□□□□ -0.96
COMMD3-215ENST00000602574 C20orf96Q9NUD7 363 aaPredicted RBP9.02□□□□□ -0.96
COMMD3-215ENST00000602574 SMOXQ9NWM0 555 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 TMX2Q9Y320 296 aa9.02□□□□□ -0.96
COMMD3-215ENST00000602574 RPTORQ8N122 1335 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 SSU72P8A0A1W2PR75 194 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 TRIM75PA6NK02 468 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 KCNJ18B7U540 433 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 WRBO00258 174 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 TOR1BO14657 336 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 RIPK2O43353 540 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 SPAG6O75602 509 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 PPM1BO75688 479 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 CCNKO75909 580 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 NDST3O95803 873 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 APOA4P06727 396 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 HOXD4P09016 255 aaPredicted RBP9.02□□□□□ -0.97
COMMD3-215ENST00000602574 BRAFP15056 766 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 AKR1B1P15121 316 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 STMN1P16949 149 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 PSMC3P17980 439 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 HOXC12P31275 282 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 PRIM2P49643 509 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 PSMD4P55036 377 aaKnown RBP9.02□□□□□ -0.97
COMMD3-215ENST00000602574 TEKQ02763 1124 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 KRR1Q13601 381 aaKnown RBP9.02□□□□□ -0.97
COMMD3-215ENST00000602574 GALEQ14376 348 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 KCNJ12Q14500 433 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 MTHFSDQ2M296 383 aaKnown RBP9.02□□□□□ -0.97
COMMD3-215ENST00000602574 GRAMD1BQ3KR37 738 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 ATG16L1Q676U5 607 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 PDPK2PQ6A1A2 396 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 ZNF544Q6NX49 715 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 STXBP4Q6ZWJ1 553 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 KCNK18Q7Z418 384 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 LIX1LQ8IVB5 337 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 SLC22A9Q8IVM8 553 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 DCP1BQ8IZD4 617 aaKnown RBP9.02□□□□□ -0.97
COMMD3-215ENST00000602574 CARFQ8N187 725 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 ANKRD35Q8N283 1001 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 KLHL36Q8N4N3 616 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 POU5F2Q8N7G0 328 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 OR6F1Q8NGZ6 308 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 MGARPQ8TDB4 240 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 TCP10LQ8TDR4 215 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 DEPDC1BQ8WUY9 529 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 CCDC120Q96HB5 630 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 ZC3H10Q96K80 434 aaKnown RBP9.02□□□□□ -0.97
COMMD3-215ENST00000602574 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.02□□□□□ -0.97
COMMD3-215ENST00000602574 TRIM39Q9HCM9 518 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 ARHGEF4Q9NR80 690 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 COA4Q9NYJ1 87 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 KLQ9UEF7 1012 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 GLS2Q9UI32 602 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 TRMT6Q9UJA5 497 aaKnown RBP9.02□□□□□ -0.97
COMMD3-215ENST00000602574 TSR3Q9UJK0 312 aaKnown RBP9.02□□□□□ -0.97
COMMD3-215ENST00000602574 GGA1Q9UJY5 639 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 PSMD13Q9UNM6 376 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 PLAGL2Q9UPG8 496 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 PIAS3Q9Y6X2 628 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 NAV1Q8NEY1 1877 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 ZMYM2Q9UBW7 1377 aa9.02□□□□□ -0.97
COMMD3-215ENST00000602574 A0A1W2PPW3 197 aa9.01□□□□□ -0.97
COMMD3-215ENST00000602574 PPP1R3GB7ZBB8 358 aa9.01□□□□□ -0.97
COMMD3-215ENST00000602574 ATP2A1O14983 1001 aa9.01□□□□□ -0.97
COMMD3-215ENST00000602574 PRPF4O43172 522 aaKnown RBP eCLIP9.01□□□□□ -0.97
COMMD3-215ENST00000602574 GUCA1CO95843 209 aa9.01□□□□□ -0.97
COMMD3-215ENST00000602574 BCL10O95999 233 aa9.01□□□□□ -0.97
COMMD3-215ENST00000602574 IL1BP01584 269 aa9.01□□□□□ -0.97
COMMD3-215ENST00000602574 ALBP02768 609 aa9.01□□□□□ -0.97
COMMD3-215ENST00000602574 YES1P07947 543 aa9.01□□□□□ -0.97
COMMD3-215ENST00000602574 PLEKP08567 350 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms