RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 DNAJC28Q9NX36 388 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 SLC25A13Q9UJS0 675 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 SARDHQ9UL12 918 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 KIAA1257Q9ULG3 409 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 ATXN7L1Q9ULK2 861 aaPredicted RBP10.43□□□□□ -0.74
TRIM28-210ENST00000597618 ENTPD2Q9Y5L3 495 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 MYO9AB2RTY4 2548 aa10.43□□□□□ -0.74
TRIM28-210ENST00000597618 NYNRINQ9P2P1 1898 aaKnown RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 NOTCH2Q04721 2471 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 A6NNZ2 444 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 H3BM21 787 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 MCF2LO15068 1137 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ATP9BO43861 1147 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 NEBLO76041 1014 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 TNFSF15O95150 251 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 MYL1P05976 194 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ITGA2BP08514 1039 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 SFTPCP11686 197 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 PDGFRAP16234 1089 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ZNF18P17022 549 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 TACR2P21452 398 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ME1P48163 572 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 RGS7P49802 495 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 TAS2R38P59533 333 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 MCCD1P59942 119 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ZNF177Q13360 481 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ADAM9Q13443 819 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 CDKN3Q16667 212 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ZNF284Q2VY69 593 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ACCSLQ4AC99 568 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 PIP5KL1Q5T9C9 394 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 TTC39BQ5VTQ0 682 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 RAP1GAP2Q684P5 730 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 FOXR1Q6PIV2 292 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 LCLAT1Q6UWP7 414 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 GCNT7Q6ZNI0 430 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 EFL1Q7Z2Z2 1120 aaKnown RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ABI3BPQ7Z7G0 1075 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 HORMAD1Q86X24 394 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 DCP2Q8IU60 420 aaKnown RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ZNF548Q8NEK5 533 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 WDR48Q8TAF3 677 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 SLC35F5Q8WV83 523 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 EEF2KMTQ96G04 330 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 INTS4Q96HW7 963 aaKnown RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 PPP1R9BQ96SB3 815 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 ARHGAP9Q9BRR9 750 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 FZD3Q9NPG1 666 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 SERTAD1Q9UHV2 236 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 DOPEY2Q9Y3R5 2298 aa10.42□□□□□ -0.74
TRIM28-210ENST00000597618 USP9XQ93008 2570 aaPredicted RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 SPTAN1Q13813 2472 aaKnown RBP10.42□□□□□ -0.74
TRIM28-210ENST00000597618 CPED1A4D0V7 1026 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 TCAF2A6NFQ2 919 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 F5H5T6 163 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 M0QYV0 167 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 PIK3R2O00459 728 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 SART1O43290 800 aaKnown RBP10.41□□□□□ -0.74
TRIM28-210ENST00000597618 ACTN4O43707 911 aaKnown RBP10.41□□□□□ -0.74
TRIM28-210ENST00000597618 GJB6O95452 261 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 NME1P15531 152 aaKnown RBP10.41□□□□□ -0.74
TRIM28-210ENST00000597618 PLK1P53350 603 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 INHBCP55103 352 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 NR0B2Q15466 257 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 DLG2Q15700 870 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 LINC00303Q3SY05 128 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 ZNF542PQ5EBM4 170 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 RABGAP1LQ5R372 815 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 PMF1Q6P1K2 205 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 GUSBP11Q6P575 273 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 Q6ZSR6 202 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 Q6ZVU0 165 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 USP53Q70EK8 1073 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 PTAR1Q7Z6K3 402 aaPredicted RBP10.41□□□□□ -0.74
TRIM28-210ENST00000597618 TAC4Q86UU9 113 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 PARGQ86W56 976 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 CCAR2Q8N163 923 aaKnown RBP10.41□□□□□ -0.74
TRIM28-210ENST00000597618 CLEC4CQ8WTT0 213 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 KLK6Q92876 244 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 RNF34Q969K3 372 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 CCDC47Q96A33 483 aaKnown RBP10.41□□□□□ -0.74
TRIM28-210ENST00000597618 ARRDC3Q96B67 414 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 SGF29Q96ES7 293 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 BTN2A3PQ96KV6 586 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 HSFY1Q96LI6 401 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 CCDC114Q96M63 670 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 TRIM62Q9BVG3 475 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 DYRK4Q9NR20 520 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 GPR27Q9NS67 375 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 XPO7Q9UIA9 1087 aaKnown RBP10.41□□□□□ -0.74
TRIM28-210ENST00000597618 FARP1Q9Y4F1 1045 aaPredicted RBP10.41□□□□□ -0.74
TRIM28-210ENST00000597618 CSNK1G3Q9Y6M4 447 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 RELNP78509 3460 aa10.41□□□□□ -0.74
TRIM28-210ENST00000597618 CCDC187A0A096LP49 1063 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 PMS2P1A4D2B8 440 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 EME2A4GXA9 379 aaPredicted RBP10.4□□□□□ -0.74
TRIM28-210ENST00000597618 SUV39H1O43463 412 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 GABBR2O75899 941 aa10.4□□□□□ -0.74
TRIM28-210ENST00000597618 AFPP02771 609 aaKnown RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms