RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 DDX1Q92499 740 aaKnown RBP16.55■□□□□ 0.24
CUX1-213ENST00000549414 SNX27Q96L92 541 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 CIPCQ9C0C6 399 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 ARHGEF4Q9NR80 690 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 PKD2L2Q9NZM6 624 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 TCRBV7S3A2A0A539 114 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 ZNF197O14709 1029 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 SERPINH1P50454 418 aaKnown RBP16.55■□□□□ 0.24
CUX1-213ENST00000549414 HDAC4P56524 1084 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 PLD1Q13393 1074 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 RNF43Q68DV7 783 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 CACUL1Q86Y37 369 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 FITM2Q8N6M3 262 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 CXorf38Q8TB03 319 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 CNBD2Q96M20 576 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 POMKQ9H5K3 350 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 COL18A1P39060 1754 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 MYH15Q9Y2K3 1946 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 GRIN2DO15399 1336 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 CAPN15O75808 1086 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 PLOD1Q02809 727 aaPredicted RBP16.55■□□□□ 0.24
CUX1-213ENST00000549414 USP4Q13107 963 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 NOMO2Q5JPE7 1267 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 ECHDC2Q86YB7 292 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 PRKD2Q9BZL6 878 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 UBXN6Q9BZV1 441 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 RIC8BQ9NVN3 520 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 KCNK4Q9NYG8 393 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 HOXA2O43364 376 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 MYO1DO94832 1006 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 PCBP1Q15365 356 aaKnown RBP eCLIP16.55■□□□□ 0.246e-6■■■■■ 34.5
CUX1-213ENST00000549414 PPM1JQ5JR12 505 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 TRMT10BQ6PF06 316 aaKnown RBP16.55■□□□□ 0.24
CUX1-213ENST00000549414 CLEC4FQ8N1N0 589 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 KYQ8NBH2 561 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 THUMPD3Q9BV44 507 aaKnown RBP16.55■□□□□ 0.24
CUX1-213ENST00000549414 ALG9Q9H6U8 611 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 GID8Q9NWU2 228 aa16.55■□□□□ 0.24
CUX1-213ENST00000549414 ITGB4P16144 1822 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 SYNDIG1LA6NDD5 238 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 CLASP2O75122 1294 aaKnown RBP16.54■□□□□ 0.24
CUX1-213ENST00000549414 KATNA1O75449 491 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 SERPIND1P05546 499 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 CCDC166P0CW27 439 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 DSG1Q02413 1049 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 SOWAHAQ2M3V2 549 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 TRMT5Q32P41 509 aaKnown RBP16.54■□□□□ 0.24
CUX1-213ENST00000549414 PCID2Q5JVF3 399 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 ANKRD23Q86SG2 305 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 TMEM130Q8N3G9 435 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 PCED1BQ96HM7 432 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 SEMA3CQ99985 751 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 SNX15Q9NRS6 342 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 DERAQ9Y315 318 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 PTCH2Q9Y6C5 1203 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 AHDC1Q5TGY3 1603 aaPredicted RBP16.54■□□□□ 0.24
CUX1-213ENST00000549414 SYCE1LA8MT33 242 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 A8MUI8 341 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 PAGE1O75459 146 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 FMO4P31512 558 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 WNT7BP56706 349 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 TMEM63BQ5T3F8 832 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 CATSPER1Q8NEC5 780 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 DIS3LQ8TF46 1054 aaKnown RBP16.54■□□□□ 0.24
CUX1-213ENST00000549414 PYDC1Q8WXC3 89 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 ACE2Q9BYF1 805 aaPredicted RBP16.54■□□□□ 0.24
CUX1-213ENST00000549414 ADNPQ9H2P0 1102 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 SYNDIG1Q9H7V2 258 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 MID1IP1Q9NPA3 183 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 GGA2Q9UJY4 613 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 PLA2G4CQ9UP65 541 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 YJEFN3A6XGL0 299 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 E7ENQ6 273 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 H2AFYO75367 372 aaKnown RBP16.54■□□□□ 0.24
CUX1-213ENST00000549414 TPBGLP0DKB5 382 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 MRPS35P82673 323 aaKnown RBP16.54■□□□□ 0.24
CUX1-213ENST00000549414 TMED1Q13445 227 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 C10orf107Q8IVU9 208 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 NRBF2Q96F24 287 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 CDRT15Q96T59 188 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 SAR1AQ9NR31 198 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 CHRAC1Q9NRG0 131 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 PCDHGB4Q9UN71 923 aa16.54■□□□□ 0.24
CUX1-213ENST00000549414 TMEM88BA6NKF7 163 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 TUSC3Q13454 348 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 PSMD5Q16401 504 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 GLT6D1Q7Z4J2 308 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 SDCBP2Q9H190 292 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 SYTL2Q9HCH5 934 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 MORF4L1Q9UBU8 362 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 SIX4Q9UIU6 781 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 ZNF112Q9UJU3 913 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 C15orf41Q9Y2V0 281 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 GIT1Q9Y2X7 761 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 PRPF4O43172 522 aaKnown RBP eCLIP16.53■□□□□ 0.243e-6■■□□□ 11.6
CUX1-213ENST00000549414 ASGR1P07306 291 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 STK32AQ8WU08 396 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 MFSD3Q96ES6 412 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 C17orf80Q9BSJ5 609 aa16.53■□□□□ 0.24
CUX1-213ENST00000549414 PNPOQ9NVS9 261 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms