RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 PCDHGA5Q9Y5G8 931 aa16.32■□□□□ 0.2
LIME1-209ENST00000494776 MUC22E2RYF6 1773 aaPredicted RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 EIF3CLB5ME19 914 aaKnown RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 FGF10O15520 208 aaPredicted RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 ATP9BO43861 1147 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 LRP3O75074 770 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 VAV1P15498 845 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 GLDCP23378 1020 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 HTR7P34969 479 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 PCK1P35558 622 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 MPLP40238 635 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 VASPP50552 380 aaPredicted RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 ZBTB16Q05516 673 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 POLD3Q15054 466 aaPredicted RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 CCDC6Q16204 474 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 PPP6R3Q5H9R7 873 aaPredicted RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 SPDYCQ5MJ68 293 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 DAB2IPQ5VWQ8 1189 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 LINGO4Q6UY18 593 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 DSG4Q86SJ6 1040 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 MMAAQ8IVH4 418 aaKnown RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 RTL3Q8N8U3 475 aaKnown RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 TC2NQ8N9U0 490 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 PTPRN2Q92932 1015 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 TOE1Q96GM8 510 aaKnown RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 CCDC114Q96M63 670 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 PEBP4Q96S96 227 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 EIF3CQ99613 913 aaKnown RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 RSPH9Q9H1X1 276 aaPredicted RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 MAGEH1Q9H213 219 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 ZWILCHQ9H900 591 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 NDFIP2Q9NV92 336 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 UVRAGQ9P2Y5 699 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 NENFQ9UMX5 172 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 HS3ST2Q9Y278 367 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 NCKAP1Q9Y2A7 1128 aa16.31■□□□□ 0.2
LIME1-209ENST00000494776 EP300Q09472 2414 aaPredicted RBP16.31■□□□□ 0.2
LIME1-209ENST00000494776 MT-CO1P00395 513 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 IL1BP01584 269 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 TMEM253P0C7T8 217 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 SRCP12931 536 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 ACVRL1P37023 503 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 PSMD8P48556 350 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 SLC20A2Q08357 652 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 SEMA3BQ13214 749 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 ELAVL3Q14576 367 aaKnown RBP16.3■□□□□ 0.2
LIME1-209ENST00000494776 CA9Q16790 459 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 BOLA3Q53S33 107 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 LYSMD4Q5XG99 296 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 Q6ZVU0 165 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 PSTKQ8IV42 348 aaKnown RBP16.3■□□□□ 0.2
LIME1-209ENST00000494776 FRS2Q8WU20 508 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 OR8D1Q8WZ84 308 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 HSPH1Q92598 858 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 PIGKQ92643 395 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 ARHGEF2Q92974 986 aaKnown RBP16.3■□□□□ 0.2
LIME1-209ENST00000494776 KCTD15Q96SI1 283 aaPredicted RBP16.3■□□□□ 0.2
LIME1-209ENST00000494776 GPR174Q9BXC1 333 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 SEMA4GQ9NTN9 838 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 WSB2Q9NYS7 404 aaPredicted RBP16.3■□□□□ 0.2
LIME1-209ENST00000494776 SCML1Q9UN30 329 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 NEU3Q9UQ49 428 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 DMDP11532 3685 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 GVINP1Q7Z2Y8 2422 aa16.3■□□□□ 0.2
LIME1-209ENST00000494776 CKAP5Q14008 2032 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 BCLAF3A2AJT9 711 aaKnown RBP16.29■□□□□ 0.2
LIME1-209ENST00000494776 K7ERQ8 282 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 PTGER3P43115 390 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 RECQLP46063 649 aaPredicted RBP16.29■□□□□ 0.2
LIME1-209ENST00000494776 DNA2P51530 1060 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 CLCN6P51797 869 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 GEMIN4P57678 1058 aaKnown RBP16.29■□□□□ 0.2
LIME1-209ENST00000494776 ZNF33AQ06730 810 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 CST6Q15828 149 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 CSRP2Q16527 193 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 HADHQ16836 314 aaKnown RBP16.29■□□□□ 0.2
LIME1-209ENST00000494776 SMTNL2Q2TAL5 461 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 KCNT1Q5JUK3 1230 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 SYCP2LQ5T4T6 812 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 NIPA2Q8N8Q9 360 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 C12orf50Q8NA57 414 aaPredicted RBP16.29■□□□□ 0.2
LIME1-209ENST00000494776 HSPA12BQ96MM6 686 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 FAM129BQ96TA1 746 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 OMDQ99983 421 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 ACE2Q9BYF1 805 aaPredicted RBP16.29■□□□□ 0.2
LIME1-209ENST00000494776 BTBD1Q9H0C5 482 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 PABPC3Q9H361 631 aaKnown RBP16.29■□□□□ 0.2
LIME1-209ENST00000494776 PARD6AQ9NPB6 346 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 FBXL12Q9NXK8 326 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 LCMT1Q9UIC8 334 aa16.29■□□□□ 0.2
LIME1-209ENST00000494776 CFAP54Q96N23 3096 aa16.28■□□□□ 0.2
LIME1-209ENST00000494776 TMEM110-MUSTN1A8MSY1 372 aa16.28■□□□□ 0.2
LIME1-209ENST00000494776 MEI4A8MW99 385 aa16.28■□□□□ 0.2
LIME1-209ENST00000494776 WASH4PA8MWX3 477 aa16.28■□□□□ 0.2
LIME1-209ENST00000494776 H3BRJ5 948 aa16.28■□□□□ 0.2
LIME1-209ENST00000494776 MID1O15344 667 aa16.28■□□□□ 0.2
LIME1-209ENST00000494776 ADH1BP00325 375 aa16.28■□□□□ 0.2
LIME1-209ENST00000494776 GOT1P17174 413 aa16.28■□□□□ 0.2
LIME1-209ENST00000494776 IL1R2P27930 398 aa16.28■□□□□ 0.2
LIME1-209ENST00000494776 SLC8A1P32418 973 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms