RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 DDX42Q86XP3 938 aaKnown RBP eCLIP5.63□□□□□ -1.51
PTPN4-210ENST00000485247 PTRH1Q86Y79 214 aaKnown RBP5.63□□□□□ -1.51
PTPN4-210ENST00000485247 C1QL4Q86Z23 238 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 FAM177A1Q8N128 213 aaPredicted RBP5.63□□□□□ -1.51
PTPN4-210ENST00000485247 DAW1Q8N136 415 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 PDCL2Q8N4E4 241 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 ZNF655Q8N720 491 aaPredicted RBP5.63□□□□□ -1.51
PTPN4-210ENST00000485247 ANKS4BQ8N8V4 417 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 ERMNQ8TAM6 284 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 WBP2Q969T9 261 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 BICD1Q96G01 975 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 XPO6Q96QU8 1125 aaKnown RBP5.63□□□□□ -1.51
PTPN4-210ENST00000485247 CCNL2Q96S94 520 aaPredicted RBP5.63□□□□□ -1.51
PTPN4-210ENST00000485247 PKMYT1Q99640 499 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 ACBD6Q9BR61 282 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 BBS2Q9BXC9 721 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 PCED1AQ9H1Q7 454 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 EPN3Q9H201 632 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 PLEKHB1Q9UF11 243 aaPredicted RBP5.63□□□□□ -1.51
PTPN4-210ENST00000485247 LRWD1Q9UFC0 647 aa5.63□□□□□ -1.51
PTPN4-210ENST00000485247 USP9YO00507 2555 aaPredicted RBP5.63□□□□□ -1.51
PTPN4-210ENST00000485247 SCN1AP35498 2009 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 ARID1BQ8NFD5 2236 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 COCHO43405 550 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 CACNG3O60359 315 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 TSPAN3O60637 253 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 PPFIA2O75334 1257 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 CSO75390 466 aaKnown RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 SEMA4FO95754 770 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 WNT1P04628 370 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 CISD3P0C7P0 127 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 IRF1P10914 325 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 SFTPCP11686 197 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 BDNFP23560 247 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 ACP1P24666 158 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 ANXA13P27216 316 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 EPHA8P29322 1005 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 RBMS1P29558 406 aaKnown RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 PPP3CCP48454 512 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 ARRB1P49407 418 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 COPAP53621 1224 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 BCAT1P54687 386 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 INHBCP55103 352 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 IFRD2Q12894 506 aaPredicted RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 SKIDA1Q1XH10 827 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 SV2CQ496J9 727 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 C3orf38Q5JPI3 329 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 BLOC1S2Q6QNY1 142 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 NSUN7Q8NE18 718 aaKnown RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 RNF34Q969K3 372 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 INTS4Q96HW7 963 aaKnown RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 FUBP3Q96I24 572 aaKnown RBP eCLIP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 SPATA17Q96L03 361 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 JAKMIP1Q96N16 626 aaKnown RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 SLC46A1Q96NT5 459 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 DEPDC7Q96QD5 511 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 TSPAN18Q96SJ8 248 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 ORAI3Q9BRQ5 295 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 CCSER1Q9C0I3 900 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 BTBD1Q9H0C5 482 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 OSBPL2Q9H1P3 480 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 TMEM60Q9H2L4 133 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 GFOD1Q9NXC2 390 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 DPP3Q9NY33 737 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 PLK2Q9NYY3 685 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 GPR160Q9UJ42 338 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 PPT2Q9UMR5 302 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 SATB2Q9UPW6 733 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 UTP20O75691 2785 aaKnown RBP5.62□□□□□ -1.51
PTPN4-210ENST00000485247 NUMA1Q14980 2115 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 CACNA1DQ01668 2161 aa5.62□□□□□ -1.51
PTPN4-210ENST00000485247 NBPF19A0A087WUL8 3843 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 FAM47DPA6NHR8 397 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 TRIM38O00635 465 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 OGTO15294 1046 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 YKT6O15498 198 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 OPA1O60313 960 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 FAM189A1O60320 539 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 ATP2C2O75185 946 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 EPHX1P07099 455 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 ADRB2P07550 413 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 XBP1P17861 261 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 ACO1P21399 889 aaKnown RBP5.61□□□□□ -1.51
PTPN4-210ENST00000485247 VAMP1P23763 118 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 PRKCHP24723 683 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 ELAVL4P26378 380 aaKnown RBP5.61□□□□□ -1.51
PTPN4-210ENST00000485247 CFPP27918 469 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 MCM7P33993 719 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 FBN2P35556 2912 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 KRT2P35908 639 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 CCT6AP40227 531 aaKnown RBP5.61□□□□□ -1.51
PTPN4-210ENST00000485247 MAGEA11P43364 429 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 ACOT2P49753 483 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 LIG4P49917 911 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 ZNF132P52740 706 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 CDH8P55286 799 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 PCBP3P57721 371 aaKnown RBP5.61□□□□□ -1.51
PTPN4-210ENST00000485247 PSMC1P62191 440 aaKnown RBP5.61□□□□□ -1.51
PTPN4-210ENST00000485247 CHRNEQ04844 493 aa5.61□□□□□ -1.51
PTPN4-210ENST00000485247 GRIN1Q05586 938 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms