RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 DPYSL3Q14195 570 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 STARD3Q14849 445 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 ZNF528Q3MIS6 628 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 PARP15Q460N3 678 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 RETSATQ6NUM9 610 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 KIAA1211LQ6NV74 962 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 ZNF662Q6ZS27 426 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 LZTR1Q8N653 840 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 LRRC57Q8N9N7 239 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 PRSS33Q8NF86 280 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 KIAA1524Q8TCG1 905 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 HMCESQ96FZ2 354 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 RPL10LQ96L21 214 aaKnown RBP12.23□□□□□ -0.45
VPS13D-204ENST00000469054 ZNF830Q96NB3 372 aaPredicted RBP12.23□□□□□ -0.45
VPS13D-204ENST00000469054 CALN1Q9BXU9 219 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 KLC2Q9H0B6 622 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 LRRC19Q9H756 370 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 CD248Q9HCU0 757 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 DDX56Q9NY93 547 aaKnown RBP12.23□□□□□ -0.45
VPS13D-204ENST00000469054 SUN2Q9UH99 717 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 HCN4Q9Y3Q4 1203 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 KIAA1549LQ6ZVL6 1849 aa12.23□□□□□ -0.45
VPS13D-204ENST00000469054 TCRBV21S2A2A0A5A6 115 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 LRRD1A4D1F6 860 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 TTC34A8MYJ7 566 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 H0Y858 1186 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 KDELR3O43731 214 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 PALMO75781 387 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 ZMPSTE24O75844 475 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 MT-CO1P00395 513 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 KRT1P04264 644 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 NRLP54845 237 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 ARF5P84085 180 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 SLC20A2Q08357 652 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 CCDC173Q0VFZ6 552 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 HNRNPA1L2Q32P51 320 aaKnown RBP12.22□□□□□ -0.45
VPS13D-204ENST00000469054 ODF2Q5BJF6 829 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 ANKRD20A8PQ5CZ79 823 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 AFMIDQ63HM1 303 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 TMCO3Q6UWJ1 677 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 VSIG1Q86XK7 387 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 ZNF354CQ86Y25 554 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 SYCE1Q8N0S2 351 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 ZNF366Q8N895 744 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 NELL1Q92832 810 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 FAF2Q96CS3 445 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 CELF6Q96J87 481 aaKnown RBP12.22□□□□□ -0.45
VPS13D-204ENST00000469054 FAM126AQ9BYI3 521 aaPredicted RBP12.22□□□□□ -0.45
VPS13D-204ENST00000469054 SLC39A8Q9C0K1 460 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 KCNF1Q9H3M0 494 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 ETNK2Q9NVF9 386 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 EBF1Q9UH73 591 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 HPCAL4Q9UM19 191 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 GUCA1BQ9UMX6 200 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 HS3ST2Q9Y278 367 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 PPP2R2CQ9Y2T4 447 aa12.22□□□□□ -0.45
VPS13D-204ENST00000469054 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.22□□□□□ -0.45
VPS13D-204ENST00000469054 CCDC163A0A0D9SF12 145 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 CXorf51AA0A1B0GTR3 108 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 TARSL2A2RTX5 802 aaKnown RBP12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ARHGAP42A6NI28 874 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 C3orf70A6NLC5 250 aaPredicted RBP12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ZNF487B1APH4 448 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ZBTB24O43167 697 aaPredicted RBP12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ATP9BO43861 1147 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 SRCP12931 536 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 SERPINB6P35237 376 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 PXNP49023 591 aaPredicted RBP12.21□□□□□ -0.45
VPS13D-204ENST00000469054 CLCN6P51797 869 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 PTPN5P54829 565 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 DMWDQ09019 674 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 SERINC3Q13530 473 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 CAMK2GQ13555 558 aaPredicted RBP12.21□□□□□ -0.45
VPS13D-204ENST00000469054 DLG2Q15700 870 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ACCSLQ4AC99 568 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 HEATR6Q6AI08 1181 aaKnown RBP12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ANO7Q6IWH7 933 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 LINGO4Q6UY18 593 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 NT5DC3Q86UY8 548 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 RASSF3Q86WH2 238 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ARHGAP12Q8IWW6 846 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 SH2D3CQ8N5H7 860 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 NPWQ8N729 165 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ATP11CQ8NB49 1132 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 PCDH19Q8TAB3 1148 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 FRS2Q8WU20 508 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 RNF25Q96BH1 459 aaPredicted RBP12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ERLEC1Q96DZ1 483 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 RNF157Q96PX1 679 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 IRF2BPLQ9H1B7 796 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 MTG2Q9H4K7 406 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 PRSS16Q9NQE7 514 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 ZSCAN32Q9NX65 697 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 AMFRQ9UKV5 643 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 MFHAS1Q9Y4C4 1052 aa12.21□□□□□ -0.45
VPS13D-204ENST00000469054 MIA3Q5JRA6 1907 aa12.21□□□□□ -0.46
VPS13D-204ENST00000469054 ZNF318Q5VUA4 2279 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 EDDM13A0A1B0GTR0 161 aa12.2□□□□□ -0.46
VPS13D-204ENST00000469054 ZSCAN5CA6NGD5 496 aaPredicted RBP12.2□□□□□ -0.46
VPS13D-204ENST00000469054 K7ERQ8 282 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms