RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Snx16Q8C080 344 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Lin7aQ8JZS0 233 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Cib4Q9D9N5 185 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Oas1eA0A0J9YV76 386 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Zbtb11G5E8B9 1050 aaKnown RBP15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Rnf19aP50636 840 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Clec4fP70194 548 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Cyp2c65Q148B1 490 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Q9CQC3 228 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 MrrfQ9D6S7 262 aaKnown RBP15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Timm50Q9D880 353 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Top3bQ9Z321 862 aaKnown RBP15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Tnks1bp1P58871 1720 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ildr2B5TVM2 661 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Vmn2r74E9PW21 853 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Itga11P61622 1188 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 MylpfP97457 169 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Wdr18Q4VBE8 431 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Kpna1Q60960 538 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ca9Q8VHB5 437 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Commd8Q9CZG3 183 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Atp6v1c1Q9Z1G3 382 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Rrn3B2RS91 656 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 PrlP06879 226 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Sipa1P46062 1037 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 MelkQ61846 643 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Otud6aQ6IE21 290 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 ErfeQ6PGN1 340 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Slc6a15Q8BG16 729 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Usp1Q8BJQ2 784 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Sytl2Q99N50 950 aa15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Alg13Q9D8C3 1166 aaKnown RBP15.8■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 4931406B18RikA2RSL7 367 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Vmn2r19G5E8G4 854 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 GzmgP13366 248 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ppm1aP49443 382 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Atp6v1e1P50518 226 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Fam131bQ3TY60 332 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Plcl1Q3USB7 1096 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 1810049J17RikQ3V2G9 153 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Arl5cQ6P068 179 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Tmem270Q6UJB9 264 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Adam32Q8K410 754 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Lrrc42Q8R2U7 421 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Gpatch1Q9DBM1 930 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Wnk3Q80XP9 1757 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Kctd18E0CZ26 429 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ptpn1P35821 432 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Traf2P39429 501 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Gabrb2P63137 512 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Zfp217Q3U0X6 1041 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ubxn7Q6P5G6 467 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Plekhh3Q8VCE9 796 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Akr1c12Q9JLI0 323 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Zfp612A0A1D5RMC2 672 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 GscQ02591 256 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Prom2Q3UUY6 835 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Slain1Q68FF7 579 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ing3Q8VEK6 421 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ndufb5Q9CQH3 189 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Zbed6D2EAC2 980 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Gm5861F6VCN9 180 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 4933402N22RikF7D1B3 190 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Gm8909G3UXE9 396 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Vmn2r5K7N788 911 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Orm2P07361 207 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Erp29P57759 262 aaKnown RBP15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Msx2Q03358 267 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ccdc117Q6PB51 277 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Slc35f5Q8R314 524 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Krt6bQ9Z331 562 aa15.79■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Vmn2r27D3YUK6 857 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Gm2832F7AEC7 200 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ercc2O08811 760 aaKnown RBP15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Lsp1P19973 330 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Faf2Q3TDN2 445 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 CamkvQ3UHL1 512 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ceacam5Q3UKK2 947 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Traf3Q60803 567 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Papss1Q60967 624 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Gja6Q6S5G4 283 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Tp53bp2Q8CG79 1128 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Cnot3Q8K0V4 751 aaKnown RBP15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Olfr356Q8VFP5 315 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Mrpl1Q99N96 336 aaKnown RBP15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 RhoaQ9QUI0 193 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Gm8369E9PZI3 166 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 PdgfaP20033 211 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 M6prP24668 278 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Rbp1Q00915 135 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Nat9Q3UG98 241 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ubtfl1Q3USZ2 394 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Ankrd42Q3V096 527 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Tbl3Q8C4J7 801 aaKnown RBP15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Slc47a1Q8K0H1 567 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Exd2Q8VEG4 650 aaKnown RBP15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Pcdhgb1Q91XX8 918 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Tas1r3Q925D8 858 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Atp6ap2Q9CYN9 350 aa15.78■□□□□ 0.12
Ccdc88b-201ENSMUST00000113440 Krt2Q3TTY5 707 aa15.78■□□□□ 0.12
Retrieved 100 of 22,080 RNA–protein pairs in 26.2 ms