RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 PDK3Q15120 406 aa20.53■□□□□ 0.88
SYNGAP1-227ENST00000638142 GRIK4Q16099 956 aa20.53■□□□□ 0.88
SYNGAP1-227ENST00000638142 TAPT1Q6NXT6 567 aa20.53■□□□□ 0.88
SYNGAP1-227ENST00000638142 C16orf89Q6UX73 402 aa20.53■□□□□ 0.88
SYNGAP1-227ENST00000638142 ALKAL1Q6UXT8 129 aa20.53■□□□□ 0.88
SYNGAP1-227ENST00000638142 DRAXINQ8NBI3 349 aaPredicted RBP20.53■□□□□ 0.88
SYNGAP1-227ENST00000638142 EMID1Q96A84 441 aaPredicted RBP20.53■□□□□ 0.88
SYNGAP1-227ENST00000638142 ZNF560Q96MR9 790 aa20.53■□□□□ 0.88
SYNGAP1-227ENST00000638142 AGAP2Q99490 1192 aa20.53■□□□□ 0.88
SYNGAP1-227ENST00000638142 H3BRB1 525 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 PIRO00625 290 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 SLC22A2O15244 555 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 AP1G1O43747 822 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 CD4P01730 458 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 PITX1P78337 314 aaPredicted RBP20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 OLIG2Q13516 323 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 MARCH8Q5T0T0 291 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 ERO1BQ86YB8 467 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 EFCAB3Q8N7B9 438 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 DNAAF3Q8N9W5 541 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 TNIP3Q96KP6 325 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 OR52B2Q96RD2 323 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 EIF2AQ9BY44 585 aaKnown RBP20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 TUT1Q9H6E5 874 aaKnown RBP20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 SETD4Q9NVD3 440 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 OXSMQ9NWU1 459 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 MAGEB16A2A368 324 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 M0QYT0 321 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 PDLIM1O00151 329 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 MATN2O00339 956 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 GTF2A2P52657 109 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 CHN2P52757 468 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 IRF9Q00978 393 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 MPP3Q13368 585 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 GRAMD1BQ3KR37 738 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 HSP90AA5PQ58FG0 334 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 PQLC1Q8N2U9 271 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 RDH11Q8TC12 318 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 STON2Q8WXE9 905 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 NDRG1Q92597 394 aaKnown RBP20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 AGAP3Q96P47 875 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 NDNQ99608 321 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 GATA5Q9BWX5 397 aaPredicted RBP20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 RAP2CQ9Y3L5 183 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 DTNAQ9Y4J8 743 aa20.52■□□□□ 0.88
SYNGAP1-227ENST00000638142 RGSL1A5PLK6 1076 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 NCAM2O15394 837 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 USP12O75317 370 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 PIK3R1P27986 724 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 TKTP29401 623 aaKnown RBP20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 HADHAP40939 763 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 PNPLA4P41247 253 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 IREB2P48200 963 aaKnown RBP20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 PRKAA2P54646 552 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 KIZQ2M2Z5 673 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 MAMDC4Q6UXC1 1216 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 DLK2Q6UY11 383 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 CATSPER4Q7RTX7 472 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 APPL2Q8NEU8 664 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 EZH1Q92800 747 aaPredicted RBP20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 PGLYRP2Q96PD5 576 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 CAB39LQ9H9S4 337 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 HES2Q9Y543 173 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 SYNJ2BP-COX16A0A087WUM0 186 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 HDAC3O15379 428 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 ALDH1A3P47895 512 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 NUDT2P50583 147 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 AIF1P55008 147 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 DLG2Q15700 870 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 KCTD11Q693B1 232 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 NOTUMQ6P988 496 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 UGT2A3Q6UWM9 527 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 SETD3Q86TU7 594 aaPredicted RBP20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 KCNMB4Q86W47 210 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 TP53INP2Q8IXH6 220 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 KYQ8NBH2 561 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 RP9Q8TA86 221 aaKnown RBP20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 WNT8BQ93098 351 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 SLC9A7Q96T83 725 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 MCMBPQ9BTE3 642 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 DUSP16Q9BY84 665 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 EPB41L1Q9H4G0 881 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 VTA1Q9NP79 307 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 COX16Q9P0S2 106 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 VPS28Q9UK41 221 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 GJD2Q9UKL4 321 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 INPP5FQ9Y2H2 1132 aa20.51■□□□□ 0.87
SYNGAP1-227ENST00000638142 SMIM31A0A1B0GVY4 71 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 SPTLC1O15269 473 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 RECQL4O94761 1208 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 LTFP02788 710 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 CYP2C9P11712 490 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 SERPINB5P36952 375 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 FOLH1Q04609 750 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 LIMS2Q7Z4I7 341 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 TMEM126BQ8IUX1 230 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 NAT14Q8WUY8 206 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 VPS39Q96JC1 886 aa20.5■□□□□ 0.87
SYNGAP1-227ENST00000638142 SLC2A13Q96QE2 648 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms