RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PSEN1P49768 467 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 MAP3K7CLP57077 242 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 DSG1Q02413 1049 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 MFSD10Q14728 455 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 FSCBQ5H9T9 825 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 RALGPS1Q5JS13 557 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 ITPRIPL1Q6GPH6 555 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 STON2Q8WXE9 905 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 JADE3Q92613 823 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 PGLYRP2Q96PD5 576 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 ECSITQ9BQ95 431 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 CRTAC1Q9NQ79 661 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 RRN3Q9NYV6 651 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 GNEQ9Y223 722 aaKnown RBP13.03□□□□□ -0.32
LINC00540-203ENST00000631321 MYO18AQ92614 2054 aaKnown RBP13.03□□□□□ -0.32
LINC00540-203ENST00000631321 YJEFN3A6XGL0 299 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 HAS3O00219 553 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 DYNC1LI2O43237 492 aaPredicted RBP13.03□□□□□ -0.32
LINC00540-203ENST00000631321 USP12O75317 370 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 ITGAXP20702 1163 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 HADHAP40939 763 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 CRYBB1P53674 252 aaPredicted RBP13.03□□□□□ -0.32
LINC00540-203ENST00000631321 IRF5Q13568 498 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 HNRNPDQ14103 355 aaKnown RBP13.03□□□□□ -0.32
LINC00540-203ENST00000631321 VWA5B1Q5TIE3 1220 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 NAPRTQ6XQN6 538 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 TNS4Q8IZW8 715 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 NPLOC4Q8TAT6 608 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 SHKBP1Q8TBC3 707 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 ZSCAN18Q8TBC5 510 aaPredicted RBP13.03□□□□□ -0.32
LINC00540-203ENST00000631321 URGCPQ8TCY9 931 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 AZIN2Q96A70 460 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 AGAP3Q96P47 875 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 TTC1Q99614 292 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 SMOQ99835 787 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 MED10Q9BTT4 135 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 IL22Q9GZX6 179 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 COG4Q9H9E3 785 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 ZDHHC7Q9NXF8 308 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 CDH22Q9UJ99 828 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 MID2Q9UJV3 735 aa13.03□□□□□ -0.32
LINC00540-203ENST00000631321 CCDC189A1A4V9 331 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 ARHGAP42A6NI28 874 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 AP3B1O00203 1094 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 TRIM13O60858 407 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 C2P06681 752 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 GTF2A2P52657 109 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 ZBTB17Q13105 803 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 MPP3Q13368 585 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 CCNIQ14094 377 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 SMAD1Q15797 465 aaKnown RBP13.02□□□□□ -0.32
LINC00540-203ENST00000631321 HSP90AA5PQ58FG0 334 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 CERCAMQ5T4B2 595 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 IZUMO2Q6UXV1 221 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 PLEKHH3Q7Z736 793 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 ANKRD23Q86SG2 305 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 KCNMB4Q86W47 210 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 PHTF2Q8N3S3 785 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 SLC25A41Q8N5S1 370 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 ZNF781Q8N8C0 355 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 DNAAF3Q8N9W5 541 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 SREK1Q8WXA9 508 aaKnown RBP13.02□□□□□ -0.32
LINC00540-203ENST00000631321 MFSD3Q96ES6 412 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 NMRAL1Q9HBL8 299 aa13.02□□□□□ -0.32
LINC00540-203ENST00000631321 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.02□□□□□ -0.33
LINC00540-203ENST00000631321 ZBTB14O43829 449 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 CACNG3O60359 315 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 UPP2O95045 317 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 HSPA4LO95757 839 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 F9P00740 461 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 APOA4P06727 396 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 GLDCP23378 1020 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 DNAJB2P25686 324 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 IRX1P78414 480 aaPredicted RBP13.02□□□□□ -0.33
LINC00540-203ENST00000631321 IRF9Q00978 393 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 CDC16Q13042 620 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 ARL13BQ3SXY8 428 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 BHLHA9Q7RTU4 235 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 DHDDSQ86SQ9 333 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 FAM35AQ86V20 835 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 LCA5Q86VQ0 697 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 ZMIZ2Q8NF64 920 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 RDH11Q8TC12 318 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 PPP1R13LQ8WUF5 828 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 TEKT5Q96M29 485 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 RTKNQ9BST9 563 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 OXCT2Q9BYC2 517 aaPredicted RBP13.02□□□□□ -0.33
LINC00540-203ENST00000631321 YIPF3Q9GZM5 350 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 NSMCE4AQ9NXX6 385 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 ANKRD6Q9Y2G4 727 aa13.02□□□□□ -0.33
LINC00540-203ENST00000631321 E2F8A0AVK6 867 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 TREHO43280 583 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 AP1G2O75843 785 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 BAG2O95816 211 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 LTFP02788 710 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 COX4I1P13073 169 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 NFKB1P19838 968 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 NCF2P19878 526 aaPredicted RBP13.01□□□□□ -0.33
LINC00540-203ENST00000631321 DNAJB1P25685 340 aa13.01□□□□□ -0.33
LINC00540-203ENST00000631321 EPHX2P34913 555 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms