RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 RAG1P15918 1043 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 GSSP48637 474 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 MYL6P60660 151 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 TROAPQ12815 778 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 BOP1Q14137 746 aaKnown RBP10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF268Q14587 947 aaPredicted RBP10.82□□□□□ -0.68
CLIP1-209ENST00000537178 LIN54Q6MZP7 749 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 TTC27Q6P3X3 843 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 DNAJC14Q6Y2X3 702 aaPredicted RBP10.82□□□□□ -0.68
CLIP1-209ENST00000537178 APTXQ7Z2E3 356 aaKnown RBP10.82□□□□□ -0.68
CLIP1-209ENST00000537178 PCSK9Q8NBP7 692 aaKnown RBP10.82□□□□□ -0.68
CLIP1-209ENST00000537178 TCP10LQ8TDR4 215 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 POLR1BQ9H9Y6 1135 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ATP13A1Q9HD20 1204 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 SAR1AQ9NR31 198 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF112Q9UJU3 913 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 PSME2Q9UL46 239 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 CDH9Q9ULB4 789 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 CRYL1Q9Y2S2 319 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 SLC37A4O43826 429 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 MGRN1O60291 552 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 MED24O75448 989 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 COPZ1P61923 177 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF470Q6ECI4 717 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 IRGCQ6NXR0 463 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 SV2AQ7L0J3 742 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF34Q8IZ26 560 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 CLYBLQ8N0X4 340 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 VCPIP1Q96JH7 1222 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 SYT15Q9BQS2 421 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 DUSP10Q9Y6W6 482 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 TOGARAM1Q9Y4F4 1720 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 NR2C2P49116 596 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 NEK3P51956 506 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF135P52742 658 aaPredicted RBP10.82□□□□□ -0.68
CLIP1-209ENST00000537178 TOP3AQ13472 1001 aaPredicted RBP10.82□□□□□ -0.68
CLIP1-209ENST00000537178 CCNIQ14094 377 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 PAGE2BQ5JRK9 111 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 TCHHL1Q5QJ38 904 aaPredicted RBP10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF621Q6ZSS3 439 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 DSG4Q86SJ6 1040 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 SNX32Q86XE0 403 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ARRDC4Q8NCT1 418 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 HTR3CQ8WXA8 447 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 CDRT15Q96T59 188 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 VAT1Q99536 393 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 MROH8Q9H579 483 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 OSGEPQ9NPF4 335 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 COMMD9Q9P000 198 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ITGA11Q9UKX5 1188 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 ZMYM2Q9UBW7 1377 aa10.82□□□□□ -0.68
CLIP1-209ENST00000537178 A0A087WZ62 844 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 RIPK2O43353 540 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 EPN2O95208 641 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 SREBF1P36956 1147 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 GMPSP49915 693 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 TBX4P57082 545 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 PPP4CP60510 307 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 GIT2Q14161 759 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 TAF13Q15543 124 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 TTC23Q5W5X9 447 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 AMER2Q8N7J2 671 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 SMYD1Q8NB12 490 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 SKA1Q96BD8 255 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 C1orf50Q9BV19 199 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 TMEM39BQ9GZU3 492 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 FAM192AQ9GZU8 254 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 LACRTQ9GZZ8 138 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 TRIT1Q9H3H1 467 aaKnown RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 MYOZ2Q9NPC6 264 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 LRRC4BQ9NT99 713 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 DDX18Q9NVP1 670 aaKnown RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 KBTBD4Q9NVX7 518 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 KANSL3Q9P2N6 904 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 AXIN2Q9Y2T1 843 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 TNPO3Q9Y5L0 923 aaKnown RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 KCPQ6ZWJ8 1503 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 UBE2QL1A1L167 161 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 ZBTB14O43829 449 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 TYMPP19971 482 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 SPIRE1Q08AE8 756 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 LRRC74BQ6ZQY2 392 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF720Q7Z2F6 126 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 ZNF571Q7Z3V5 609 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 CAMK1DQ8IU85 385 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 CROCCP3Q8IVE0 287 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 AGBL3Q8NEM8 1001 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 YME1L1Q96TA2 773 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 BCL2L14Q9BZR8 327 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 DCLK3Q9C098 648 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 CRNNQ9UBG3 495 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 BARX2Q9UMQ3 279 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 PCDHB5Q9Y5E4 795 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 VAPBO95292 243 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 TFRCP02786 760 aaKnown RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 ALDH2P05091 517 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 GCLCP48506 637 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 CLK2P49760 499 aaKnown RBP10.81□□□□□ -0.68
CLIP1-209ENST00000537178 DMPKQ09013 629 aa10.81□□□□□ -0.68
CLIP1-209ENST00000537178 DCTN2Q13561 401 aaKnown RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms