RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 PSMD12O00232 456 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 FBP2O00757 339 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 GRID2O43424 1007 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 CSPG5O95196 566 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 GABRB3P28472 473 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 RPL14P50914 215 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 PSMD7P51665 324 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 ESRRGP62508 458 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 TFAMQ00059 246 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 RHDQ02161 417 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 GBE1Q04446 702 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 PTPN11Q06124 597 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 TRIM25Q14258 630 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 PTK2BQ14289 1009 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 NHSL2Q5HYW2 709 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 GRTP1Q5TC63 336 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 DCLRE1AQ6PJP8 1040 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 CLEC14AQ86T13 490 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 SREK1Q8WXA9 508 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 SGF29Q96ES7 293 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 PIWIL1Q96J94 861 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 PPP1R36Q96LQ0 422 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 TWNKQ96RR1 684 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 UHRF1Q96T88 793 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 HNRNPABQ99729 332 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 CPNE1Q99829 537 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 DCUN1D5Q9BTE7 237 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 DUS2Q9NX74 493 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 TXNDC16Q9P2K2 825 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 ADAM28Q9UKQ2 775 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 A0A087WXM4 84 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 TOMM70O94826 608 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 LTFP02788 710 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 HOXC6P09630 235 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 YBX3P16989 372 aaKnown RBP eCLIP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 MGAT1P26572 445 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 CCND2P30279 289 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 CDH8P55286 799 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 NSUN2Q08J23 767 aaKnown RBP eCLIP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 CCDC14Q49A88 953 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 TMEM198Q66K66 360 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 SCYL2Q6P3W7 929 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 ZBTB33Q86T24 672 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 TOP1MTQ969P6 601 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 SLCO4A1Q96BD0 722 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 TMA16Q96EY4 203 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 ABHD8Q96I13 439 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 QKIQ96PU8 341 aaKnown RBP eCLIP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 SNRNP25Q9BV90 132 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 PAIP1Q9H074 479 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 OXSMQ9NWU1 459 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 PTBP2Q9UKA9 531 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 AFG3L2Q9Y4W6 797 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 FER1L6Q2WGJ9 1857 aa17.43■□□□□ 0.38
SQSTM1-211ENST00000506690 ZNF487B1APH4 448 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 M0QYV0 167 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 RGS20O76081 388 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 INHBBP09529 407 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 ERVK-10P10266 1014 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 CD151P48509 253 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 MTX3Q5HYI7 312 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 FASTKD5Q7L8L6 764 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 DUS3LQ96G46 650 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 TBCBQ99426 244 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 NPAS2Q99743 824 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 NAT9Q9BTE0 207 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 DRC3Q9H069 523 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 SELENONQ9NZV5 590 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 HMGXB4Q9UGU5 601 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 ITGB1BP2Q9UKP3 347 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 CDC14AQ9UNH5 594 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 CROCCQ5TZA2 2017 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 SOBPA7XYQ1 873 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 ATE1O95260 518 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 NR3C2P08235 984 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 FGFR3P22607 806 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 CYP2F1P24903 491 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 HALP42357 657 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 SESN2P58004 480 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 SURF1Q15526 300 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 KCNT2Q6UVM3 1135 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 FAM183BPQ6ZVS7 135 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 LYSMD3Q7Z3D4 306 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 FAM47BQ8NA70 645 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 TFAP2CQ92754 450 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 PLEKHA8Q96JA3 519 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 DOK1Q99704 481 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 RBBP8Q99708 897 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 TRPV6Q9H1D0 765 aa17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 UTP6Q9NYH9 597 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 CPSF3Q9UKF6 684 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-211ENST00000506690 TMEM247A6NEH6 219 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 TRIM64A6NGJ6 449 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 MDM4O15151 490 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 FOXD2O60548 495 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 OATP04181 439 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 TFEBP19484 476 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 BCAP31P51572 246 aa17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 SMAD1Q15797 465 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-211ENST00000506690 TBC1D15Q8TC07 691 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms