RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 RUVBL1Q9Y265 456 aaKnown RBP4.38□□□□□ -1.71
USP54-217ENST00000498213 CLUHO75153 1309 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 KDM3AQ9Y4C1 1321 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 SHROOM3Q8TF72 1996 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 ZMYM2Q9UBW7 1377 aa4.38□□□□□ -1.71
USP54-217ENST00000498213 MYH7P12883 1935 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 A0A087WV48 116 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 ERICH2A1L162 156 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 MBLAC1A4D2B0 266 aaPredicted RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 GRID2IPA4D2P6 1211 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 GCOM1H8Y6P7 765 aaPredicted RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 K7ESF4 209 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 CDX4O14627 284 aaPredicted RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 ERN1O75460 977 aaKnown RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 RFPL2O75678 378 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 RPP40O75818 363 aaKnown RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 CAVIN2O95810 425 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 POLR2MP0CAP2 368 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 CCDC192P0DO97 292 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 HKR1P10072 659 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 ITGAMP11215 1152 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 ZFP36P26651 326 aaKnown RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 KIF5BP33176 963 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 METAP2P50579 478 aaKnown RBP eCLIP4.37□□□□□ -1.71
USP54-217ENST00000498213 BLOC1S1P78537 153 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 PPP3CAQ08209 521 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 TRDNQ13061 729 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 GIT2Q14161 759 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 CDC37Q16543 378 aaPredicted RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 ERCC6LQ2NKX8 1250 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 AGAP9Q5VTM2 703 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 PGM2L1Q6PCE3 622 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 CYP26C1Q6V0L0 522 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 CCNI2Q6ZMN8 369 aaPredicted RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 CACNA2D4Q7Z3S7 1137 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 FMNL3Q8IVF7 1028 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 VPS52Q8N1B4 723 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 CNTD1Q8N815 330 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 CASKIN2Q8WXE0 1202 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 RNF31Q96EP0 1072 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 SPATA33Q96N06 139 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 SLC2A13Q96QE2 648 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 KXD1Q9BQD3 176 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 C16orf70Q9BSU1 422 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 RHOBTB2Q9BYZ6 727 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 TOR3AQ9H497 397 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 RIOX1Q9H6W3 641 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 MLXIPQ9HAP2 919 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 C1orf112Q9NSG2 853 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 C2orf42Q9NWW7 574 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 ERAP1Q9NZ08 941 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 TNNQ9UQP3 1299 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 MRPS17Q9Y2R5 130 aaKnown RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 ACTL7AQ9Y615 435 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 SALL3Q9BXA9 1300 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 LRRK2Q5S007 2527 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 PATJQ8NI35 1801 aa4.37□□□□□ -1.71
USP54-217ENST00000498213 MYO5AQ9Y4I1 1855 aaKnown RBP4.37□□□□□ -1.71
USP54-217ENST00000498213 TTC3P53804 2025 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 NBPF19A0A087WUL8 3843 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 hCG_1984214I3L0E3 225 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 M0QZ92 97 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 INPPL1O15357 1258 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 CFIP05156 583 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 CALM1P0DP23 149 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 CALM2P0DP24 149 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 CALM3P0DP25 149 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 AGXTP21549 392 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 KLRC2P26717 231 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 PPM1AP35813 382 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 RCAN1P53805 252 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 SLC16A1P53985 500 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 PDE1AP54750 535 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 MGAT3Q09327 533 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 TP53BP2Q13625 1128 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 TMEM266Q2M3C6 531 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 HSDL1Q3SXM5 330 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 ABHD17BQ5VST6 288 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 Q6YL49 198 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 C15orf39Q6ZRI6 1047 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 TSHZ1Q6ZSZ6 1077 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 PLPPR4Q7Z2D5 763 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 DDX42Q86XP3 938 aaKnown RBP eCLIP4.36□□□□□ -1.71
USP54-217ENST00000498213 RHOT1Q8IXI2 618 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 ADGRF4Q8IZF3 695 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 FAM177A1Q8N128 213 aaPredicted RBP4.36□□□□□ -1.71
USP54-217ENST00000498213 ZNF713Q8N859 430 aaPredicted RBP4.36□□□□□ -1.71
USP54-217ENST00000498213 DNAJB3Q8WWF6 145 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 RUFY2Q8WXA3 655 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 SMG7Q92540 1137 aaKnown RBP4.36□□□□□ -1.71
USP54-217ENST00000498213 HOXB13Q92826 284 aaPredicted RBP4.36□□□□□ -1.71
USP54-217ENST00000498213 CUL5Q93034 780 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 ZBTB10Q96DT7 871 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 NEU1Q99519 415 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 ZSWIM1Q9BR11 485 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 ALOXE3Q9BYJ1 711 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 SMARCAD1Q9H4L7 1026 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 ELAC1Q9H777 363 aaKnown RBP4.36□□□□□ -1.71
USP54-217ENST00000498213 MAN1C1Q9NR34 630 aa4.36□□□□□ -1.71
USP54-217ENST00000498213 KLHL11Q9NVR0 708 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms