RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 STK40Q8N2I9 435 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 STARD8Q92502 1023 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 LPPQ93052 612 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 MKL1Q969V6 931 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 PHACTR1Q9C0D0 580 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 RAD21L1Q9H4I0 556 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 RNF19AQ9NV58 838 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 MARCH2Q9P0N8 246 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 TNFSF13BQ9Y275 285 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 A0A1B0GW55 424 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 SLC9A3R1O14745 358 aaPredicted RBP8.87□□□□□ -0.99
PTCD3-201ENST00000254630 TPP1O14773 563 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 CYP1A2P05177 515 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 DUX4L2P0CJ85 424 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 DUX4L3P0CJ86 424 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 DUX4L4P0CJ87 422 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 DUX4L5P0CJ88 424 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 DUX4L6P0CJ89 424 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 DUX4L7P0CJ90 424 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 NPR3P17342 541 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 DGKAP23743 735 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 KDELR1P24390 212 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 CD86P42081 329 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 RANBP1P43487 201 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 UNC93AQ86WB7 457 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 DUSP9Q99956 384 aaKnown RBP8.87□□□□□ -0.99
PTCD3-201ENST00000254630 WDR18Q9BV38 432 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 SYBUQ9NX95 663 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 DUX4Q9UBX2 424 aa8.87□□□□□ -0.99
PTCD3-201ENST00000254630 SALL3Q9BXA9 1300 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 MOXD2PA6NHM9 499 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 TISP43B9A030 160 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 SMNDC1O75940 238 aaKnown RBP eCLIP8.86□□□□□ -0.991e-29■■□□□ 14.3
PTCD3-201ENST00000254630 EIF2S1P05198 315 aaKnown RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 CTSEP14091 401 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 NOS2P35228 1153 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 XRCC4Q13426 336 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 DPYSL3Q14195 570 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 CYP2A13Q16696 494 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 FAM98BQ52LJ0 330 aaKnown RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 SLC45A4Q5BKX6 768 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 C1orf186Q6ZWK4 172 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 GPSM1Q86YR5 675 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 SPATA20Q8TB22 786 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 HGH1Q9BTY7 390 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 AGXT2Q9BYV1 514 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 KLHL28Q9NXS3 571 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 DNPEPQ9ULA0 475 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 GPSM3Q9Y4H4 160 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 UBIAD1Q9Y5Z9 338 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 ZBTB14O43829 449 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 ADRB2P07550 413 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 CLK2P49760 499 aaKnown RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 SNRPD1P62314 119 aaKnown RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 SP3Q02447 781 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 DGKZQ13574 1117 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 CRY1Q16526 586 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 TBCELQ5QJ74 424 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 MFSD7Q6UXD7 560 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 VN1R5Q7Z5H4 357 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 VGLL2Q8N8G2 317 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 PURBQ96QR8 312 aaKnown RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 VPS51Q9UID3 782 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 COL1A2P08123 1366 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 CHADO15335 359 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 SCTRP47872 440 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 HECTD3Q5T447 861 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 CES5AQ6NT32 575 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 AFTPHQ6ULP2 937 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 FIBCD1Q8N539 461 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 LENG9Q96B70 501 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 FAM163AQ96GL9 167 aaPredicted RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 VAT1Q99536 393 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 FAM126AQ9BYI3 521 aaPredicted RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 GDF3Q9NR23 364 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 DUSP12Q9UNI6 340 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 KPNA3O00505 521 aaPredicted RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 TRDMT1O14717 391 aaKnown RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 PSMB4P28070 264 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 PIK3CGP48736 1102 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 TREML2Q5T2D2 321 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 FAM45BPQ6NSW5 357 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 FAM45AQ8TCE6 357 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 RXFP1Q9HBX9 757 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 BLOC1S4Q9NUP1 217 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 ASTN1O14525 1302 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 A0A088AWK7 358 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 VAPBO95292 243 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 CALCAP01258 141 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 HNRNPCP07910 306 aaKnown RBP eCLIP8.86□□□□□ -0.992e-6■□□□□ 11.2
PTCD3-201ENST00000254630 GLI1P08151 1106 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 RARAP10276 462 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 ZNF10P21506 573 aaPredicted RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 FEN1P39748 380 aaKnown RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 CRYBB1P53674 252 aaPredicted RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 RRP1BQ14684 758 aaKnown RBP8.86□□□□□ -0.99
PTCD3-201ENST00000254630 DDR2Q16832 855 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 PAGE2BQ5JRK9 111 aa8.86□□□□□ -0.99
PTCD3-201ENST00000254630 EID3Q8N140 333 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms