RNA–Protein interactions for RNA: YKL213C

DOA1, Transcript of WD repeat protein required for ubiquitin-mediated protein degradation, yeast

Gene DOA1, Length 2,148 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DOA1	YKL213C	RPT3	P33298	428 aa	Known RBP	5.7	□□□□□ -1.5
DOA1	YKL213C	PNT1	P38969	423 aa		5.7	□□□□□ -1.5
DOA1	YKL213C	JJJ2	P46997	583 aa		5.7	□□□□□ -1.5
DOA1	YKL213C	INM2	Q05533	292 aa		5.7	□□□□□ -1.5
DOA1	YKL213C	WRS1	Q12109	432 aa	Known RBP	5.7	□□□□□ -1.5
DOA1	YKL213C	YFH7	P43591	353 aa		5.69	□□□□□ -1.5
DOA1	YKL213C	PIB2	P53191	635 aa		5.69	□□□□□ -1.5
DOA1	YKL213C	ARG82	P07250	355 aa		5.69	□□□□□ -1.5
DOA1	YKL213C	TAF13	P11747	167 aa		5.69	□□□□□ -1.5
DOA1	YKL213C	RPC31	P17890	251 aa		5.69	□□□□□ -1.5
DOA1	YKL213C	RPS7A	P26786	190 aa	Known RBP	5.69	□□□□□ -1.5
DOA1	YKL213C	SPC110	P32380	944 aa		5.69	□□□□□ -1.5
DOA1	YKL213C	GEF1	P37020	779 aa		5.69	□□□□□ -1.5
DOA1	YKL213C	PBY1	P38254	753 aa		5.69	□□□□□ -1.5
DOA1	YKL213C	FAR11	P53917	953 aa		5.69	□□□□□ -1.5
DOA1	YKL213C	TIF6	Q12522	245 aa	Known RBP	5.69	□□□□□ -1.5
DOA1	YKL213C	VAS1	P07806	1104 aa	Known RBP	5.68	□□□□□ -1.5
DOA1	YKL213C	HVG1	P0CE11	249 aa		5.68	□□□□□ -1.5
DOA1	YKL213C	KTR1	P27810	393 aa	Known RBP	5.68	□□□□□ -1.5
DOA1	YKL213C	CDC11	P32458	415 aa		5.68	□□□□□ -1.5
DOA1	YKL213C	PTK1	P36002	662 aa	Predicted RBP	5.68	□□□□□ -1.5
DOA1	YKL213C	UTP7	P40055	554 aa	Known RBP	5.68	□□□□□ -1.5
DOA1	YKL213C	RPT2	P40327	437 aa	Known RBP	5.68	□□□□□ -1.5
DOA1	YKL213C	MTC3	P53077	123 aa		5.68	□□□□□ -1.5
DOA1	YKL213C	CSR2	Q12734	1121 aa		5.68	□□□□□ -1.5
DOA1	YKL213C	BSD2	P38356	321 aa		5.68	□□□□□ -1.5
DOA1	YKL213C	OSH3	P38713	996 aa	Known RBP	5.68	□□□□□ -1.5
DOA1	YKL213C	YMR147W	P40218	223 aa	Known RBP	5.68	□□□□□ -1.5
DOA1	YKL213C	HOS4	P40480	1083 aa		5.68	□□□□□ -1.5
DOA1	YKL213C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
DOA1	YKL213C	RIM20	Q12033	661 aa		5.68	□□□□□ -1.5
DOA1	YKL213C	CYB2	P00175	591 aa		5.67	□□□□□ -1.5
DOA1	YKL213C	GRX7	P38068	203 aa		5.67	□□□□□ -1.5
DOA1	YKL213C	TY4A-J	P47023	414 aa		5.67	□□□□□ -1.5
DOA1	YKL213C	GCR2	Q01722	534 aa		5.67	□□□□□ -1.5
DOA1	YKL213C	ACK1	Q07622	623 aa	Predicted RBP	5.67	□□□□□ -1.5
DOA1	YKL213C	SRF1	Q12516	437 aa		5.67	□□□□□ -1.5
DOA1	YKL213C	SNF3	P10870	884 aa		5.66	□□□□□ -1.5
DOA1	YKL213C	MDL2	P33311	773 aa		5.66	□□□□□ -1.5
DOA1	YKL213C	STM1	P39015	273 aa	Known RBP	5.66	□□□□□ -1.5
DOA1	YKL213C	RRT6	P53117	311 aa	Predicted RBP	5.66	□□□□□ -1.5
DOA1	YKL213C	SEC20	P28791	383 aa		5.66	□□□□□ -1.5
DOA1	YKL213C	NPL4	P33755	580 aa		5.66	□□□□□ -1.5
DOA1	YKL213C	SPT21	P35209	758 aa		5.66	□□□□□ -1.5
DOA1	YKL213C	AAP1	P37898	856 aa	Known RBP	5.66	□□□□□ -1.5
DOA1	YKL213C	BOI1	P38041	980 aa	Known RBP	5.66	□□□□□ -1.5
DOA1	YKL213C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	5.66	□□□□□ -1.5	RIP-Chip
DOA1	YKL213C	BBC1	P47068	1157 aa		5.66	□□□□□ -1.5
DOA1	YKL213C	PUS6	P53294	404 aa		5.66	□□□□□ -1.5
DOA1	YKL213C	APL6	P46682	809 aa		5.65	□□□□□ -1.5
DOA1	YKL213C	YJL171C	P46992	396 aa		5.65	□□□□□ -1.5
DOA1	YKL213C	IRC8	P47046	822 aa		5.65	□□□□□ -1.5
DOA1	YKL213C	ENP2	P48234	707 aa	Known RBP	5.65	□□□□□ -1.5
DOA1	YKL213C	DOS2	P54858	310 aa		5.65	□□□□□ -1.5
DOA1	YKL213C	KAR5	Q04746	504 aa		5.65	□□□□□ -1.5
DOA1	YKL213C	LAM4	P38800	1345 aa		5.65	□□□□□ -1.51
DOA1	YKL213C	PDR1	P12383	1068 aa		5.65	□□□□□ -1.51
DOA1	YKL213C	OPI1	P21957	404 aa		5.65	□□□□□ -1.51
DOA1	YKL213C	DLD1	P32891	587 aa		5.65	□□□□□ -1.51
DOA1	YKL213C	NIT1	P40447	199 aa		5.65	□□□□□ -1.51
DOA1	YKL213C	IOC3	P43596	787 aa		5.65	□□□□□ -1.51
DOA1	YKL213C	PKH3	Q03306	898 aa	Predicted RBP	5.65	□□□□□ -1.51
DOA1	YKL213C	CST9	Q06032	482 aa		5.65	□□□□□ -1.51
DOA1	YKL213C	TOM1	Q03280	3268 aa		5.64	□□□□□ -1.51
DOA1	YKL213C	PET111	P08468	800 aa		5.64	□□□□□ -1.51
DOA1	YKL213C	GAL2	P13181	574 aa		5.64	□□□□□ -1.51
DOA1	YKL213C	HXT13	P39924	564 aa		5.64	□□□□□ -1.51
DOA1	YKL213C	HXT17	P53631	564 aa		5.64	□□□□□ -1.51
DOA1	YKL213C	TAH18	Q12181	623 aa		5.64	□□□□□ -1.51
DOA1	YKL213C	FLO1	P32768	1537 aa		5.64	□□□□□ -1.51
DOA1	YKL213C	SDH2	P21801	266 aa		5.63	□□□□□ -1.51
DOA1	YKL213C	PIP2	P52960	996 aa		5.63	□□□□□ -1.51
DOA1	YKL213C	NNF2	P53253	936 aa		5.63	□□□□□ -1.51
DOA1	YKL213C	APE3	P37302	537 aa	Known RBP	5.63	□□□□□ -1.51
DOA1	YKL213C	NCS6	P53088	359 aa		5.63	□□□□□ -1.51
DOA1	YKL213C	NSG2	P53898	299 aa		5.63	□□□□□ -1.51
DOA1	YKL213C	MOT2	P34909	587 aa	Known RBP	5.62	□□□□□ -1.51
DOA1	YKL213C	MET1	P36150	593 aa		5.62	□□□□□ -1.51
DOA1	YKL213C	RSC30	P38781	883 aa		5.62	□□□□□ -1.51
DOA1	YKL213C	PPM2	Q08282	695 aa		5.62	□□□□□ -1.51
DOA1	YKL213C	TPM1	P17536	199 aa	Known RBP	5.62	□□□□□ -1.51
DOA1	YKL213C	RBA50	Q04418	439 aa		5.62	□□□□□ -1.51
DOA1	YKL213C	COQ1	P18900	473 aa		5.61	□□□□□ -1.51
DOA1	YKL213C	SPC42	P36094	363 aa		5.61	□□□□□ -1.51
DOA1	YKL213C	KEL1	P38853	1164 aa	Known RBP	5.61	□□□□□ -1.51
DOA1	YKL213C	RRP8	P38961	392 aa	Known RBP	5.61	□□□□□ -1.51
DOA1	YKL213C	GSC2	P40989	1895 aa		5.61	□□□□□ -1.51
DOA1	YKL213C	AAD16	Q02895	342 aa		5.61	□□□□□ -1.51
DOA1	YKL213C	PEX29	Q03370	554 aa		5.61	□□□□□ -1.51
DOA1	YKL213C	ETT1	Q08421	412 aa	Known RBP	5.61	□□□□□ -1.51
DOA1	YKL213C	SSF2	Q12153	453 aa	Predicted RBP	5.61	□□□□□ -1.51
DOA1	YKL213C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	5.6	□□□□□ -1.51	not detected
DOA1	YKL213C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	5.6	□□□□□ -1.51	not detected
DOA1	YKL213C	AIM21	P40563	679 aa		5.6	□□□□□ -1.51
DOA1	YKL213C	JIP4	Q03361	876 aa		5.6	□□□□□ -1.51
DOA1	YKL213C	RTS1	P38903	757 aa		5.6	□□□□□ -1.51
DOA1	YKL213C	SLN1	P39928	1220 aa	Predicted RBP	5.6	□□□□□ -1.51
DOA1	YKL213C	SEC9	P40357	651 aa		5.6	□□□□□ -1.51
DOA1	YKL213C	YPL260W	Q08977	551 aa		5.6	□□□□□ -1.51
DOA1	YKL213C	CHO2	P05374	869 aa	Known RBP	5.59	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 36.5 ms