RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W TRS33Q99394 268 aa5.51□□□□□ -1.53
PRE9YGR135W PEP1P32319 1579 aa5.5□□□□□ -1.53
PRE9YGR135W PDR15Q04182 1529 aaKnown RBP5.5□□□□□ -1.53
PRE9YGR135W AI1P03875 834 aa5.5□□□□□ -1.53
PRE9YGR135W MNL2Q12205 849 aa5.5□□□□□ -1.53
PRE9YGR135W PUS1Q12211 544 aaKnown RBP5.5□□□□□ -1.53
PRE9YGR135W YKL091CP33324 310 aaKnown RBP5.49□□□□□ -1.53
PRE9YGR135W RRP14P36080 434 aaKnown RBP5.49□□□□□ -1.53
PRE9YGR135W FYV10P40492 516 aa5.49□□□□□ -1.53
PRE9YGR135W ALD6P54115 500 aaKnown RBP5.49□□□□□ -1.53
PRE9YGR135W KOG1P38873 1557 aa5.49□□□□□ -1.53
PRE9YGR135W PDR10P51533 1564 aa5.49□□□□□ -1.53
PRE9YGR135W RPP1AP05318 106 aaPredicted RBP5.48□□□□□ -1.53
PRE9YGR135W CYT1P07143 309 aa5.48□□□□□ -1.53
PRE9YGR135W FPS1P23900 669 aa5.48□□□□□ -1.53
PRE9YGR135W MCM2P29469 868 aa5.48□□□□□ -1.53
PRE9YGR135W PEP7P32609 515 aa5.48□□□□□ -1.53
PRE9YGR135W YTA6P40328 754 aa5.48□□□□□ -1.53
PRE9YGR135W NSG2P53898 299 aa5.48□□□□□ -1.53
PRE9YGR135W ALD3P54114 506 aa5.48□□□□□ -1.53
PRE9YGR135W RPS31P05759 152 aaKnown RBP5.47□□□□□ -1.53
PRE9YGR135W MRPL16P38064 232 aa5.47□□□□□ -1.53
PRE9YGR135W OSW7P43611 510 aa5.47□□□□□ -1.53
PRE9YGR135W CWH41P53008 833 aa5.47□□□□□ -1.53
PRE9YGR135W RTS3P53289 263 aa5.47□□□□□ -1.53
PRE9YGR135W WRS1Q12109 432 aaKnown RBP5.47□□□□□ -1.53
PRE9YGR135W TY3B-GQ99315 1547 aa5.47□□□□□ -1.53
PRE9YGR135W LEU1P07264 779 aaKnown RBP5.46□□□□□ -1.54
PRE9YGR135W UBP1P25037 809 aa5.46□□□□□ -1.54
PRE9YGR135W RPT1P33299 467 aaKnown RBP5.46□□□□□ -1.54
PRE9YGR135W YJR008WP47085 338 aa5.46□□□□□ -1.54
PRE9YGR135W MLP2P40457 1679 aa5.46□□□□□ -1.54
PRE9YGR135W VPS15P22219 1454 aa5.45□□□□□ -1.54
PRE9YGR135W ULS1Q08562 1619 aa5.45□□□□□ -1.54
PRE9YGR135W MDJ1P35191 511 aa5.45□□□□□ -1.54
PRE9YGR135W SPR3P41901 512 aa5.45□□□□□ -1.54
PRE9YGR135W TRS120Q04183 1289 aa5.45□□□□□ -1.54
PRE9YGR135W SPR28Q04921 423 aa5.45□□□□□ -1.54
PRE9YGR135W THI72Q08579 599 aa5.45□□□□□ -1.54
PRE9YGR135W LSO1Q3E827 93 aa5.45□□□□□ -1.54
PRE9YGR135W CLN2P20438 545 aa5.44□□□□□ -1.54
PRE9YGR135W SRB8P25648 1427 aa5.44□□□□□ -1.54
PRE9YGR135W MLF3P32047 452 aa5.44□□□□□ -1.54
PRE9YGR135W FPR3P38911 411 aaKnown RBP5.44□□□□□ -1.54
PRE9YGR135W CWC24P53769 259 aa5.44□□□□□ -1.54
PRE9YGR135W YNL165WP53891 406 aa5.44□□□□□ -1.54
PRE9YGR135W YLR419WQ06698 1435 aaKnown RBP5.43□□□□□ -1.54
PRE9YGR135W YFL066CP43538 392 aa5.43□□□□□ -1.54
PRE9YGR135W VPS16Q03308 798 aa5.43□□□□□ -1.54
PRE9YGR135W UTP4Q06679 776 aaKnown RBP5.43□□□□□ -1.54
PRE9YGR135W GPM1P00950 247 aaKnown RBP5.42□□□□□ -1.54
PRE9YGR135W CIT2P08679 460 aa5.42□□□□□ -1.54
PRE9YGR135W RGP1P16664 663 aa5.42□□□□□ -1.54
PRE9YGR135W TSR4P25040 408 aa5.42□□□□□ -1.54
PRE9YGR135W SCD5P34758 872 aa5.42□□□□□ -1.54
PRE9YGR135W BOI1P38041 980 aaKnown RBP5.42□□□□□ -1.54
PRE9YGR135W IOC3P43596 787 aa5.42□□□□□ -1.54
PRE9YGR135W ALG12P53730 551 aa5.42□□□□□ -1.54
PRE9YGR135W PIN2Q12057 282 aa5.42□□□□□ -1.54
PRE9YGR135W Q0182Q9ZZW1 134 aa5.42□□□□□ -1.54
PRE9YGR135W MDS3P53094 1487 aa5.42□□□□□ -1.54
PRE9YGR135W NUP159P40477 1460 aa5.41□□□□□ -1.54
PRE9YGR135W PHO4P07270 312 aaKnown RBP5.41□□□□□ -1.54
PRE9YGR135W SUV3P32580 737 aa5.41□□□□□ -1.54
PRE9YGR135W NGR1P32831 672 aaKnown RBP5.41□□□□□ -1.54
PRE9YGR135W EBP2P36049 427 aaKnown RBP5.41□□□□□ -1.54
PRE9YGR135W CAB3P36076 571 aa5.41□□□□□ -1.54
PRE9YGR135W RPS26AP39938 119 aaKnown RBP5.41□□□□□ -1.54
PRE9YGR135W RPS26BP39939 119 aaKnown RBP5.41□□□□□ -1.54
PRE9YGR135W NUG1P40010 520 aaKnown RBP5.41□□□□□ -1.54
PRE9YGR135W GPI13Q07830 1017 aa5.41□□□□□ -1.54
PRE9YGR135W CDC53Q12018 815 aaKnown RBP5.41□□□□□ -1.54
PRE9YGR135W YOR131CQ12486 218 aa5.41□□□□□ -1.54
PRE9YGR135W SNT2P53127 1403 aa5.4□□□□□ -1.54
PRE9YGR135W GCD6P32501 712 aaKnown RBP5.4□□□□□ -1.54
PRE9YGR135W ATG36P46983 293 aa5.4□□□□□ -1.54
PRE9YGR135W UBP3Q01477 912 aaKnown RBP RIP-Chip data5.4□□□□□ -1.54not detected
PRE9YGR135W FOX2Q02207 900 aaKnown RBP5.4□□□□□ -1.54
PRE9YGR135W RMD1Q03441 430 aa5.4□□□□□ -1.54
PRE9YGR135W NSE3Q05541 303 aa5.4□□□□□ -1.54
PRE9YGR135W YPR053CQ6Q5F3 151 aa5.4□□□□□ -1.54
PRE9YGR135W KNS1P32350 737 aaPredicted RBP5.39□□□□□ -1.55
PRE9YGR135W ISC10P32645 267 aa5.39□□□□□ -1.55
PRE9YGR135W TOM20P35180 183 aa5.39□□□□□ -1.55
PRE9YGR135W DAK2P43550 591 aa5.39□□□□□ -1.55
PRE9YGR135W LSB3P43603 459 aaKnown RBP5.39□□□□□ -1.55
PRE9YGR135W YJL049WP47048 450 aa5.39□□□□□ -1.55
PRE9YGR135W YNR014WP53719 212 aa5.39□□□□□ -1.55
PRE9YGR135W UFD2P54860 961 aa5.39□□□□□ -1.55
PRE9YGR135W TY1A-DR2Q03964 440 aaKnown RBP5.39□□□□□ -1.55
PRE9YGR135W POB3Q04636 552 aaKnown RBP5.39□□□□□ -1.55
PRE9YGR135W TY1B-DR3Q99231 1755 aa5.39□□□□□ -1.55
PRE9YGR135W DNF1P32660 1571 aa5.38□□□□□ -1.55
PRE9YGR135W STI1P15705 589 aaKnown RBP RIP-Chip data5.38□□□□□ -1.55not detected
PRE9YGR135W PDC5P16467 563 aaKnown RBP5.38□□□□□ -1.55
PRE9YGR135W PET112P33893 541 aa5.38□□□□□ -1.55
PRE9YGR135W YBR197CP38306 217 aa5.38□□□□□ -1.55
PRE9YGR135W SBE2P42223 864 aaKnown RBP5.38□□□□□ -1.55
PRE9YGR135W MTO1P53070 669 aa5.38□□□□□ -1.55
PRE9YGR135W ESF1Q06344 628 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms