RNA–Protein interactions for RNA: YDR213W

UPC2, Transcript of Sterol regulatory element binding protein, yeast

Gene UPC2, Length 2,742 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UPC2	YDR213W	CTK3	P46963	296 aa	Predicted RBP	4.84	□□□□□ -1.63
UPC2	YDR213W	VPS4	P52917	437 aa		4.84	□□□□□ -1.63
UPC2	YDR213W	NIS1	P53939	407 aa		4.84	□□□□□ -1.63
UPC2	YDR213W	TAP42	Q04372	366 aa		4.84	□□□□□ -1.63
UPC2	YDR213W	MCM16	Q12262	181 aa		4.84	□□□□□ -1.63
UPC2	YDR213W	LEU2	P04173	364 aa	Predicted RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	DPS1	P04802	557 aa	Known RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	RPS24A	P0CX31	135 aa	Known RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	RPS24B	P0CX32	135 aa	Known RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	TAF13	P11747	167 aa		4.83	□□□□□ -1.64
UPC2	YDR213W	PUP1	P25043	261 aa		4.83	□□□□□ -1.64
UPC2	YDR213W	SCJ1	P25303	377 aa		4.83	□□□□□ -1.64
UPC2	YDR213W	YOL098C	Q12496	1037 aa		4.83	□□□□□ -1.64
UPC2	YDR213W	PGA3	Q12746	312 aa	Known RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	RPS19A	P07280	144 aa	Known RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	RPS19B	P07281	144 aa	Predicted RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	ELM1	P32801	640 aa		4.83	□□□□□ -1.64
UPC2	YDR213W	PAM1	P37304	830 aa	Known RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	AAP1	P37898	856 aa	Known RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	SEC9	P40357	651 aa		4.83	□□□□□ -1.64
UPC2	YDR213W	YJR142W	P47173	342 aa		4.83	□□□□□ -1.64
UPC2	YDR213W	HGH1	P48362	394 aa	Known RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	APT1	P49435	187 aa	Known RBP	4.83	□□□□□ -1.64
UPC2	YDR213W	YDR338C	Q05497	695 aa		4.83	□□□□□ -1.64
UPC2	YDR213W	RIM20	Q12033	661 aa		4.83	□□□□□ -1.64
UPC2	YDR213W	GAP1	P19145	602 aa	Predicted RBP	4.82	□□□□□ -1.64
UPC2	YDR213W	SLA1	P32790	1244 aa		4.82	□□□□□ -1.64
UPC2	YDR213W	IPL1	P38991	367 aa		4.82	□□□□□ -1.64
UPC2	YDR213W	MVP1	P40959	511 aa	Known RBP	4.82	□□□□□ -1.64
UPC2	YDR213W	COQ4	O13525	335 aa		4.82	□□□□□ -1.64
UPC2	YDR213W	SLX5	P32828	619 aa	Known RBP	4.82	□□□□□ -1.64
UPC2	YDR213W	STO1	P34160	861 aa	Known RBP	4.82	□□□□□ -1.64
UPC2	YDR213W	THI12	P42883	340 aa		4.82	□□□□□ -1.64
UPC2	YDR213W	THI5	P43534	340 aa		4.82	□□□□□ -1.64
UPC2	YDR213W	THI11	P47183	340 aa		4.82	□□□□□ -1.64
UPC2	YDR213W	RTF1	P53064	558 aa		4.82	□□□□□ -1.64
UPC2	YDR213W	THI13	Q07748	340 aa		4.82	□□□□□ -1.64
UPC2	YDR213W	RUD3	Q12234	484 aa	Known RBP	4.82	□□□□□ -1.64
UPC2	YDR213W	SRP54	P20424	541 aa	Known RBP	4.81	□□□□□ -1.64
UPC2	YDR213W	DAL7	P21826	554 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	HEL1	P36113	551 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	AIM9	P40053	627 aa	Known RBP	4.81	□□□□□ -1.64
UPC2	YDR213W	OMS1	Q06668	471 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	TMA16	Q08687	178 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	SUP45	P12385	437 aa	Known RBP	4.81	□□□□□ -1.64
UPC2	YDR213W	UBC1	P21734	215 aa	Known RBP	4.81	□□□□□ -1.64
UPC2	YDR213W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
UPC2	YDR213W	MAL33	P38157	468 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	SEC26	P41810	973 aa	Known RBP	4.81	□□□□□ -1.64
UPC2	YDR213W	STR2	P47164	639 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	PIB2	P53191	635 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	YNL108C	P53929	270 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	VPS72	Q03388	795 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	DDP1	Q99321	188 aa	Known RBP	4.81	□□□□□ -1.64
UPC2	YDR213W	YRF1-4	O13559	1382 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	PDC1	P06169	563 aa	Known RBP	4.81	□□□□□ -1.64
UPC2	YDR213W	PET111	P08468	800 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	SSA2	P10592	639 aa	Known RBP	4.81	□□□□□ -1.64
UPC2	YDR213W	RAD51	P25454	400 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	YDJ1	P25491	409 aa	Known RBP	4.81	□□□□□ -1.64
UPC2	YDR213W	GSY2	P27472	705 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	PSY4	P38193	441 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	MRPS35	P53292	345 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	MDM38	Q08179	573 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	YOR223W	Q12015	292 aa		4.81	□□□□□ -1.64
UPC2	YDR213W	RAD4	P14736	754 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	YJU3	P28321	313 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	RTG2	P32608	588 aa	Known RBP	4.8	□□□□□ -1.64
UPC2	YDR213W	GRX4	P32642	244 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	CAJ1	P39101	391 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	ALD2	P47771	506 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	CAF130	P53280	1122 aa	Predicted RBP	4.8	□□□□□ -1.64
UPC2	YDR213W	YNL050C	P53952	270 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	ZDS2	P54786	942 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	SLP1	Q12232	587 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	DPH5	P32469	300 aa	Predicted RBP	4.8	□□□□□ -1.64
UPC2	YDR213W	NDC80	P40460	691 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	DNM1	P54861	757 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	SEC39	Q12745	709 aa		4.8	□□□□□ -1.64
UPC2	YDR213W	RAD1	P06777	1100 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	SSA4	P22202	642 aa	Known RBP	4.79	□□□□□ -1.64
UPC2	YDR213W	SWI3	P32591	825 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	SSF1	P38789	453 aa	Predicted RBP	4.79	□□□□□ -1.64
UPC2	YDR213W	SPT8	P38915	602 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	CCT4	P39078	528 aa	Known RBP	4.79	□□□□□ -1.64
UPC2	YDR213W	MRX10	Q05648	414 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	ATG23	Q06671	453 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	YPR204W	Q08995	1032 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	PDR18	P53756	1333 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	RPO41	P13433	1351 aa	Known RBP	4.79	□□□□□ -1.64
UPC2	YDR213W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
UPC2	YDR213W	GUT1	P32190	709 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	NTH2	P35172	780 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	UGA2	P38067	497 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	TPS3	P38426	1054 aa	Known RBP	4.79	□□□□□ -1.64
UPC2	YDR213W	CIC1	P38779	376 aa	Known RBP	4.79	□□□□□ -1.64
UPC2	YDR213W	SWI1	P09547	1314 aa		4.79	□□□□□ -1.64
UPC2	YDR213W	YME2	P32843	850 aa		4.78	□□□□□ -1.64
UPC2	YDR213W	RSC30	P38781	883 aa		4.78	□□□□□ -1.64
UPC2	YDR213W	LAM1	P38851	1228 aa		4.78	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 7.4 ms