RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ANKARQ7Z5J8 1434 aa24.55■■□□□ 1.52
CLN3-264ENST00000637985 SPATA31A1Q5TZJ5 1347 aa24.55■■□□□ 1.52
CLN3-264ENST00000637985 NUP188Q5SRE5 1749 aa24.53■■□□□ 1.52
CLN3-264ENST00000637985 NBPF8Q3BBV2 869 aa24.53■■□□□ 1.52
CLN3-264ENST00000637985 NBPF14Q5TI25 921 aa24.53■■□□□ 1.52
CLN3-264ENST00000637985 C14orf93Q9H972 538 aaKnown RBP24.53■■□□□ 1.52
CLN3-264ENST00000637985 DCAF8L1A6NGE4 600 aa24.52■■□□□ 1.52
CLN3-264ENST00000637985 SPON1Q9HCB6 807 aa24.52■■□□□ 1.52
CLN3-264ENST00000637985 NINLQ9Y2I6 1382 aa24.52■■□□□ 1.52
CLN3-264ENST00000637985 PRAM1Q96QH2 718 aa24.51■■□□□ 1.51
CLN3-264ENST00000637985 PRDM11Q9NQV5 511 aa24.51■■□□□ 1.51
CLN3-264ENST00000637985 CRYBG1Q9Y4K1 1723 aa24.51■■□□□ 1.51
CLN3-264ENST00000637985 SAFB2Q14151 953 aaKnown RBP eCLIP24.5■■□□□ 1.51
CLN3-264ENST00000637985 PPARGC1BQ86YN6 1023 aaKnown RBP24.5■■□□□ 1.51
CLN3-264ENST00000637985 PPP1R1BQ9UD71 204 aaPredicted RBP24.5■■□□□ 1.51
CLN3-264ENST00000637985 GPRASP1Q5JY77 1395 aa24.5■■□□□ 1.51
CLN3-264ENST00000637985 DHX57Q6P158 1386 aaKnown RBP24.5■■□□□ 1.51
CLN3-264ENST00000637985 KCNQ2O43526 872 aa24.49■■□□□ 1.51
CLN3-264ENST00000637985 ACIN1Q9UKV3 1341 aaKnown RBP24.48■■□□□ 1.51
CLN3-264ENST00000637985 CFAP70Q5T0N1 1121 aa24.45■■□□□ 1.5
CLN3-264ENST00000637985 KIAA0232Q92628 1395 aa24.43■■□□□ 1.5
CLN3-264ENST00000637985 PDE3BQ13370 1112 aa24.43■■□□□ 1.5
CLN3-264ENST00000637985 BARGINQ6ZT62 677 aa24.43■■□□□ 1.5
CLN3-264ENST00000637985 STRN4Q9NRL3 753 aa24.43■■□□□ 1.5
CLN3-264ENST00000637985 DLC1Q96QB1 1528 aa24.43■■□□□ 1.5
CLN3-264ENST00000637985 PRR36Q9H6K5 1346 aa24.42■■□□□ 1.5
CLN3-264ENST00000637985 POGKQ9P215 609 aa24.42■■□□□ 1.5
CLN3-264ENST00000637985 CAMTA1Q9Y6Y1 1673 aa24.42■■□□□ 1.5
CLN3-264ENST00000637985 CHRNA2Q15822 529 aa24.41■■□□□ 1.5
CLN3-264ENST00000637985 PAK3O75914 559 aaPredicted RBP24.39■■□□□ 1.49
CLN3-264ENST00000637985 ZNF784Q8NCA9 323 aaPredicted RBP24.39■■□□□ 1.49
CLN3-264ENST00000637985 USP35Q9P2H5 1018 aa24.39■■□□□ 1.49
CLN3-264ENST00000637985 UTRNP46939 3433 aa24.39■■□□□ 1.49
CLN3-264ENST00000637985 HIRIP3Q9BW71 556 aaPredicted RBP24.38■■□□□ 1.49
CLN3-264ENST00000637985 EIF3AQ14152 1382 aaKnown RBP24.38■■□□□ 1.49
CLN3-264ENST00000637985 NGDNQ8NEJ9 315 aaKnown RBP24.37■■□□□ 1.49
CLN3-264ENST00000637985 TULP4Q9NRJ4 1543 aa24.36■■□□□ 1.49
CLN3-264ENST00000637985 SSH2Q76I76 1423 aa24.35■■□□□ 1.49
CLN3-264ENST00000637985 ZC3H6P61129 1189 aaKnown RBP24.34■■□□□ 1.49
CLN3-264ENST00000637985 PHRF1Q9P1Y6 1649 aaKnown RBP24.34■■□□□ 1.49
CLN3-264ENST00000637985 WASLO00401 505 aaPredicted RBP24.33■■□□□ 1.49
CLN3-264ENST00000637985 EVA1CP58658 441 aa24.33■■□□□ 1.49
CLN3-264ENST00000637985 MPHOSPH9Q99550 1183 aa24.33■■□□□ 1.49
CLN3-264ENST00000637985 MINK1Q8N4C8 1332 aaPredicted RBP24.33■■□□□ 1.48
CLN3-264ENST00000637985 TCP11L2Q8N4U5 519 aa24.32■■□□□ 1.48
CLN3-264ENST00000637985 LARP1Q6PKG0 1096 aaKnown RBP24.31■■□□□ 1.48
CLN3-264ENST00000637985 CASZ1Q86V15 1759 aa24.3■■□□□ 1.48
CLN3-264ENST00000637985 SENP3-EIF4A1A0A087X0R7 540 aa24.3■■□□□ 1.48
CLN3-264ENST00000637985 ADGRB1O14514 1584 aa24.29■■□□□ 1.48
CLN3-264ENST00000637985 NRKQ7Z2Y5 1582 aa24.29■■□□□ 1.48
CLN3-264ENST00000637985 C11orf95C9JLR9 678 aaPredicted RBP24.29■■□□□ 1.48
CLN3-264ENST00000637985 PLSCR1O15162 318 aa24.29■■□□□ 1.48
CLN3-264ENST00000637985 TRAK1Q9UPV9 953 aa24.29■■□□□ 1.48
CLN3-264ENST00000637985 RGPD3A6NKT7 1758 aaPredicted RBP24.29■■□□□ 1.48
CLN3-264ENST00000637985 RGPD4Q7Z3J3 1758 aa24.29■■□□□ 1.48
CLN3-264ENST00000637985 IFFO2Q5TF58 517 aa24.28■■□□□ 1.48
CLN3-264ENST00000637985 THRAP3Q9Y2W1 955 aaKnown RBP24.28■■□□□ 1.48
CLN3-264ENST00000637985 ATP7BP35670 1465 aa24.27■■□□□ 1.48
CLN3-264ENST00000637985 ANO8Q9HCE9 1232 aaPredicted RBP24.27■■□□□ 1.48
CLN3-264ENST00000637985 C1QTNF8P60827 252 aa24.26■■□□□ 1.47
CLN3-264ENST00000637985 PDGFDQ9GZP0 370 aaPredicted RBP24.26■■□□□ 1.47
CLN3-264ENST00000637985 PARP4Q9UKK3 1724 aaKnown RBP24.26■■□□□ 1.47
CLN3-264ENST00000637985 PTGER2P43116 358 aa24.25■■□□□ 1.47
CLN3-264ENST00000637985 NUTM2GQ5VZR2 741 aa24.25■■□□□ 1.47
CLN3-264ENST00000637985 LMO7Q8WWI1 1683 aa24.24■■□□□ 1.47
CLN3-264ENST00000637985 PEAK1Q9H792 1746 aa24.24■■□□□ 1.47
CLN3-264ENST00000637985 CPDO75976 1380 aa24.23■■□□□ 1.47
CLN3-264ENST00000637985 MYOM1P52179 1685 aa24.23■■□□□ 1.47
CLN3-264ENST00000637985 ITSN1Q15811 1721 aa24.22■■□□□ 1.47
CLN3-264ENST00000637985 OVOS2A0A0G2JMS6 1433 aa24.22■■□□□ 1.47
CLN3-264ENST00000637985 OVOS2A0A0J9YW53 1432 aa24.22■■□□□ 1.47
CLN3-264ENST00000637985 OVOS2Q6IE36 1432 aa24.22■■□□□ 1.47
CLN3-264ENST00000637985 ZBTB7AO95365 584 aa24.22■■□□□ 1.47
CLN3-264ENST00000637985 CHD4Q14839 1912 aa24.22■■□□□ 1.47
CLN3-264ENST00000637985 SBF2Q86WG5 1849 aa24.21■■□□□ 1.47
CLN3-264ENST00000637985 NUDT16Q96DE0 195 aaKnown RBP24.21■■□□□ 1.47
CLN3-264ENST00000637985 PROM2Q8N271 834 aa24.19■■□□□ 1.46
CLN3-264ENST00000637985 SYT17Q9BSW7 474 aa24.19■■□□□ 1.46
CLN3-264ENST00000637985 FHDC1Q9C0D6 1143 aaPredicted RBP24.18■■□□□ 1.46
CLN3-264ENST00000637985 BCL11BQ9C0K0 894 aaPredicted RBP24.18■■□□□ 1.46
CLN3-264ENST00000637985 POLR3AO14802 1390 aaPredicted RBP24.17■■□□□ 1.46
CLN3-264ENST00000637985 PTF1AQ7RTS3 328 aa24.17■■□□□ 1.46
CLN3-264ENST00000637985 ATF5Q9Y2D1 282 aaPredicted RBP24.17■■□□□ 1.46
CLN3-264ENST00000637985 COL5A2P05997 1499 aaPredicted RBP24.16■■□□□ 1.46
CLN3-264ENST00000637985 USP19O94966 1318 aa24.15■■□□□ 1.46
CLN3-264ENST00000637985 CRB1P82279 1406 aa24.14■■□□□ 1.45
CLN3-264ENST00000637985 ABTB2Q8N961 1025 aa24.14■■□□□ 1.45
CLN3-264ENST00000637985 ACEP12821 1306 aa24.13■■□□□ 1.45
CLN3-264ENST00000637985 LRRC37A3O60309 1634 aa24.12■■□□□ 1.45
CLN3-264ENST00000637985 GCP02774 474 aa24.11■■□□□ 1.45
CLN3-264ENST00000637985 DDB1Q16531 1140 aa24.11■■□□□ 1.45
CLN3-264ENST00000637985 SGIP1Q9BQI5 828 aa24.11■■□□□ 1.45
CLN3-264ENST00000637985 PLEKHG3A1L390 1219 aa24.1■■□□□ 1.45
CLN3-264ENST00000637985 CDK19Q9BWU1 502 aa24.1■■□□□ 1.45
CLN3-264ENST00000637985 CCDC61Q9Y6R9 512 aa24.1■■□□□ 1.45
CLN3-264ENST00000637985 BCL9O00512 1426 aa24.1■■□□□ 1.45
CLN3-264ENST00000637985 TOPAZ1Q8N9V7 1692 aa24.09■■□□□ 1.45
CLN3-264ENST00000637985 SLC15A2Q16348 729 aa24.09■■□□□ 1.45
CLN3-264ENST00000637985 MTFR1LQ9H019 292 aa24.09■■□□□ 1.45
CLN3-264ENST00000637985 STK32BQ9NY57 414 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms