RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SAFB2Q14151 953 aaKnown RBP eCLIP22■■□□□ 1.11
CLN3-249ENST00000636685 NBPF8Q3BBV2 869 aa22■■□□□ 1.11
CLN3-249ENST00000636685 NBPF14Q5TI25 921 aa22■■□□□ 1.11
CLN3-249ENST00000636685 SIRT1Q96EB6 747 aa22■■□□□ 1.11
CLN3-249ENST00000636685 SPON1Q9HCB6 807 aa22■■□□□ 1.11
CLN3-249ENST00000636685 CRYBG1Q9Y4K1 1723 aa22■■□□□ 1.11
CLN3-249ENST00000636685 PIK3C2GO75747 1445 aa21.99■■□□□ 1.11
CLN3-249ENST00000636685 ANKRD30BQ9BXX2 1392 aa21.99■■□□□ 1.11
CLN3-249ENST00000636685 NINLQ9Y2I6 1382 aa21.99■■□□□ 1.11
CLN3-249ENST00000636685 KCNQ2O43526 872 aa21.98■■□□□ 1.11
CLN3-249ENST00000636685 PPARGC1BQ86YN6 1023 aaKnown RBP21.98■■□□□ 1.11
CLN3-249ENST00000636685 SPATA31A1Q5TZJ5 1347 aa21.98■■□□□ 1.11
CLN3-249ENST00000636685 SPATA31E1Q6ZUB1 1445 aa21.97■■□□□ 1.11
CLN3-249ENST00000636685 PRDM11Q9NQV5 511 aa21.96■■□□□ 1.11
CLN3-249ENST00000636685 ANKARQ7Z5J8 1434 aa21.95■■□□□ 1.1
CLN3-249ENST00000636685 PRAM1Q96QH2 718 aa21.94■■□□□ 1.1
CLN3-249ENST00000636685 STRN4Q9NRL3 753 aa21.93■■□□□ 1.1
CLN3-249ENST00000636685 GPRASP1Q5JY77 1395 aa21.92■■□□□ 1.1
CLN3-249ENST00000636685 ZNF784Q8NCA9 323 aaPredicted RBP21.92■■□□□ 1.1
CLN3-249ENST00000636685 ACIN1Q9UKV3 1341 aaKnown RBP21.91■■□□□ 1.1
CLN3-249ENST00000636685 CHRNA2Q15822 529 aa21.91■■□□□ 1.1
CLN3-249ENST00000636685 KIAA0232Q92628 1395 aa21.9■■□□□ 1.1
CLN3-249ENST00000636685 SENP3-EIF4A1A0A087X0R7 540 aa21.9■■□□□ 1.1
CLN3-249ENST00000636685 PDE3BQ13370 1112 aa21.9■■□□□ 1.1
CLN3-249ENST00000636685 C14orf93Q9H972 538 aaKnown RBP21.9■■□□□ 1.1
CLN3-249ENST00000636685 USP35Q9P2H5 1018 aa21.9■■□□□ 1.1
CLN3-249ENST00000636685 DHX57Q6P158 1386 aaKnown RBP21.89■■□□□ 1.1
CLN3-249ENST00000636685 UTRNP46939 3433 aa21.89■■□□□ 1.09
CLN3-249ENST00000636685 PAK3O75914 559 aaPredicted RBP21.88■■□□□ 1.09
CLN3-249ENST00000636685 CFAP70Q5T0N1 1121 aa21.88■■□□□ 1.09
CLN3-249ENST00000636685 PRR36Q9H6K5 1346 aa21.87■■□□□ 1.09
CLN3-249ENST00000636685 POGKQ9P215 609 aa21.87■■□□□ 1.09
CLN3-249ENST00000636685 HIRIP3Q9BW71 556 aaPredicted RBP21.86■■□□□ 1.09
CLN3-249ENST00000636685 NRKQ7Z2Y5 1582 aa21.86■■□□□ 1.09
CLN3-249ENST00000636685 PHRF1Q9P1Y6 1649 aaKnown RBP21.85■■□□□ 1.09
CLN3-249ENST00000636685 IFFO2Q5TF58 517 aa21.85■■□□□ 1.09
CLN3-249ENST00000636685 CASZ1Q86V15 1759 aa21.84■■□□□ 1.09
CLN3-249ENST00000636685 BARGINQ6ZT62 677 aa21.84■■□□□ 1.09
CLN3-249ENST00000636685 ZC3H6P61129 1189 aaKnown RBP21.83■■□□□ 1.09
CLN3-249ENST00000636685 NGDNQ8NEJ9 315 aaKnown RBP21.83■■□□□ 1.09
CLN3-249ENST00000636685 CHD4Q14839 1912 aa21.82■■□□□ 1.08
CLN3-249ENST00000636685 SSH2Q76I76 1423 aa21.82■■□□□ 1.08
CLN3-249ENST00000636685 DLC1Q96QB1 1528 aa21.82■■□□□ 1.08
CLN3-249ENST00000636685 MYOM1P52179 1685 aa21.82■■□□□ 1.08
CLN3-249ENST00000636685 EVA1CP58658 441 aa21.81■■□□□ 1.08
CLN3-249ENST00000636685 ANO8Q9HCE9 1232 aaPredicted RBP21.81■■□□□ 1.08
CLN3-249ENST00000636685 MINK1Q8N4C8 1332 aaPredicted RBP21.8■■□□□ 1.08
CLN3-249ENST00000636685 TULP4Q9NRJ4 1543 aa21.8■■□□□ 1.08
CLN3-249ENST00000636685 C1QTNF8P60827 252 aa21.8■■□□□ 1.08
CLN3-249ENST00000636685 PDGFDQ9GZP0 370 aaPredicted RBP21.8■■□□□ 1.08
CLN3-249ENST00000636685 LARP1Q6PKG0 1096 aaKnown RBP21.79■■□□□ 1.08
CLN3-249ENST00000636685 NUTM2GQ5VZR2 741 aa21.78■■□□□ 1.08
CLN3-249ENST00000636685 TCP11L2Q8N4U5 519 aa21.78■■□□□ 1.08
CLN3-249ENST00000636685 SBF2Q86WG5 1849 aa21.78■■□□□ 1.08
CLN3-249ENST00000636685 EIF3AQ14152 1382 aaKnown RBP21.77■■□□□ 1.08
CLN3-249ENST00000636685 RGPD3A6NKT7 1758 aaPredicted RBP21.77■■□□□ 1.08
CLN3-249ENST00000636685 RGPD4Q7Z3J3 1758 aa21.77■■□□□ 1.08
CLN3-249ENST00000636685 ZBTB7AO95365 584 aa21.77■■□□□ 1.08
CLN3-249ENST00000636685 PARP4Q9UKK3 1724 aaKnown RBP21.76■■□□□ 1.07
CLN3-249ENST00000636685 WASLO00401 505 aaPredicted RBP21.75■■□□□ 1.07
CLN3-249ENST00000636685 PTGER2P43116 358 aa21.75■■□□□ 1.07
CLN3-249ENST00000636685 TRAK1Q9UPV9 953 aa21.75■■□□□ 1.07
CLN3-249ENST00000636685 PEAK1Q9H792 1746 aa21.75■■□□□ 1.07
CLN3-249ENST00000636685 ATF5Q9Y2D1 282 aaPredicted RBP21.74■■□□□ 1.07
CLN3-249ENST00000636685 MPHOSPH9Q99550 1183 aa21.73■■□□□ 1.07
CLN3-249ENST00000636685 LMO7Q8WWI1 1683 aa21.72■■□□□ 1.07
CLN3-249ENST00000636685 ITSN1Q15811 1721 aa21.72■■□□□ 1.07
CLN3-249ENST00000636685 PLSCR1O15162 318 aa21.72■■□□□ 1.07
CLN3-249ENST00000636685 ADGRB1O14514 1584 aa21.72■■□□□ 1.07
CLN3-249ENST00000636685 ATP7BP35670 1465 aa21.71■■□□□ 1.07
CLN3-249ENST00000636685 SYT17Q9BSW7 474 aa21.71■■□□□ 1.07
CLN3-249ENST00000636685 FHDC1Q9C0D6 1143 aaPredicted RBP21.71■■□□□ 1.07
CLN3-249ENST00000636685 PTF1AQ7RTS3 328 aa21.7■■□□□ 1.06
CLN3-249ENST00000636685 BCL11BQ9C0K0 894 aaPredicted RBP21.7■■□□□ 1.06
CLN3-249ENST00000636685 THRAP3Q9Y2W1 955 aaKnown RBP21.7■■□□□ 1.06
CLN3-249ENST00000636685 OVOS2A0A0G2JMS6 1433 aa21.7■■□□□ 1.06
CLN3-249ENST00000636685 OVOS2A0A0J9YW53 1432 aa21.7■■□□□ 1.06
CLN3-249ENST00000636685 OVOS2Q6IE36 1432 aa21.7■■□□□ 1.06
CLN3-249ENST00000636685 C11orf95C9JLR9 678 aaPredicted RBP21.68■■□□□ 1.06
CLN3-249ENST00000636685 PROM2Q8N271 834 aa21.68■■□□□ 1.06
CLN3-249ENST00000636685 NUDT16Q96DE0 195 aaKnown RBP21.67■■□□□ 1.06
CLN3-249ENST00000636685 LRRC37A3O60309 1634 aa21.66■■□□□ 1.06
CLN3-249ENST00000636685 CPDO75976 1380 aa21.65■■□□□ 1.06
CLN3-249ENST00000636685 COL5A2P05997 1499 aaPredicted RBP21.64■■□□□ 1.06
CLN3-249ENST00000636685 STK32BQ9NY57 414 aa21.62■■□□□ 1.05
CLN3-249ENST00000636685 CEP350Q5VT06 3117 aa21.61■■□□□ 1.05
CLN3-249ENST00000636685 ABTB2Q8N961 1025 aa21.61■■□□□ 1.05
CLN3-249ENST00000636685 SGIP1Q9BQI5 828 aa21.61■■□□□ 1.05
CLN3-249ENST00000636685 CRB1P82279 1406 aa21.61■■□□□ 1.05
CLN3-249ENST00000636685 USP19O94966 1318 aa21.6■■□□□ 1.05
CLN3-249ENST00000636685 ACEP12821 1306 aa21.6■■□□□ 1.05
CLN3-249ENST00000636685 DDB1Q16531 1140 aa21.6■■□□□ 1.05
CLN3-249ENST00000636685 POLR3AO14802 1390 aaPredicted RBP21.6■■□□□ 1.05
CLN3-249ENST00000636685 GIGYF1O75420 1035 aaPredicted RBP21.59■■□□□ 1.05
CLN3-249ENST00000636685 SLC15A2Q16348 729 aa21.59■■□□□ 1.05
CLN3-249ENST00000636685 MTFR1LQ9H019 292 aa21.59■■□□□ 1.05
CLN3-249ENST00000636685 TOPAZ1Q8N9V7 1692 aa21.59■■□□□ 1.05
CLN3-249ENST00000636685 ARHGEF28Q8N1W1 1705 aaKnown RBP21.58■■□□□ 1.05
CLN3-249ENST00000636685 TXNRD1Q16881 649 aa21.58■■□□□ 1.05
CLN3-249ENST00000636685 AKAP12Q02952 1782 aa21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms