RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 MPHOSPH9Q99550 1183 aa10.88□□□□□ -0.67
CIITA-214ENST00000636238 POGKQ9P215 609 aa10.88□□□□□ -0.67
CIITA-214ENST00000636238 THSD7AQ9UPZ6 1657 aa10.88□□□□□ -0.67
CIITA-214ENST00000636238 SPATA31A1Q5TZJ5 1347 aa10.87□□□□□ -0.67
CIITA-214ENST00000636238 NRAPQ86VF7 1730 aa10.87□□□□□ -0.67
CIITA-214ENST00000636238 ABCA3Q99758 1704 aa10.87□□□□□ -0.67
CIITA-214ENST00000636238 BARGINQ6ZT62 677 aa10.87□□□□□ -0.67
CIITA-214ENST00000636238 PRDM11Q9NQV5 511 aa10.87□□□□□ -0.67
CIITA-214ENST00000636238 NINLQ9Y2I6 1382 aa10.87□□□□□ -0.67
CIITA-214ENST00000636238 IFT172Q9UG01 1749 aa10.87□□□□□ -0.67
CIITA-214ENST00000636238 TULP4Q9NRJ4 1543 aa10.85□□□□□ -0.67
CIITA-214ENST00000636238 YY1P25490 414 aa10.85□□□□□ -0.67
CIITA-214ENST00000636238 EZH2Q15910 746 aaKnown RBP10.85□□□□□ -0.67
CIITA-214ENST00000636238 CFAP70Q5T0N1 1121 aa10.85□□□□□ -0.67
CIITA-214ENST00000636238 PMFBP1Q8TBY8 1022 aa10.85□□□□□ -0.67
CIITA-214ENST00000636238 ATP7BP35670 1465 aa10.85□□□□□ -0.67
CIITA-214ENST00000636238 WASLO00401 505 aaPredicted RBP10.84□□□□□ -0.67
CIITA-214ENST00000636238 APBA3O96018 575 aa10.84□□□□□ -0.67
CIITA-214ENST00000636238 NGDNQ8NEJ9 315 aaKnown RBP10.84□□□□□ -0.67
CIITA-214ENST00000636238 SPON1Q9HCB6 807 aa10.84□□□□□ -0.67
CIITA-214ENST00000636238 THRAP3Q9Y2W1 955 aaKnown RBP10.84□□□□□ -0.67
CIITA-214ENST00000636238 ALS2Q96Q42 1657 aa10.83□□□□□ -0.68
CIITA-214ENST00000636238 PDE3BQ13370 1112 aa10.83□□□□□ -0.68
CIITA-214ENST00000636238 TRPM3Q9HCF6 1732 aaPredicted RBP10.83□□□□□ -0.68
CIITA-214ENST00000636238 ADGRB1O14514 1584 aa10.82□□□□□ -0.68
CIITA-214ENST00000636238 CPDO75976 1380 aa10.82□□□□□ -0.68
CIITA-214ENST00000636238 TRIM37O94972 964 aa10.82□□□□□ -0.68
CIITA-214ENST00000636238 PRR36Q9H6K5 1346 aa10.82□□□□□ -0.68
CIITA-214ENST00000636238 BRD4O60885 1362 aaPredicted RBP10.81□□□□□ -0.68
CIITA-214ENST00000636238 KIAA0232Q92628 1395 aa10.81□□□□□ -0.68
CIITA-214ENST00000636238 KCNQ2O43526 872 aa10.81□□□□□ -0.68
CIITA-214ENST00000636238 TCP11L2Q8N4U5 519 aa10.81□□□□□ -0.68
CIITA-214ENST00000636238 TNS1Q9HBL0 1735 aaKnown RBP10.81□□□□□ -0.68
CIITA-214ENST00000636238 SAFB2Q14151 953 aaKnown RBP eCLIP10.8□□□□□ -0.68
CIITA-214ENST00000636238 PPP1R1BQ9UD71 204 aaPredicted RBP10.8□□□□□ -0.68
CIITA-214ENST00000636238 SSH2Q76I76 1423 aa10.8□□□□□ -0.68
CIITA-214ENST00000636238 POLR3AO14802 1390 aaPredicted RBP10.79□□□□□ -0.68
CIITA-214ENST00000636238 PLSCR1O15162 318 aa10.79□□□□□ -0.68
CIITA-214ENST00000636238 PAK3O75914 559 aaPredicted RBP10.79□□□□□ -0.68
CIITA-214ENST00000636238 FAM182BQ5T319 152 aa10.79□□□□□ -0.68
CIITA-214ENST00000636238 PLEKHG5O94827 1062 aa10.78□□□□□ -0.68
CIITA-214ENST00000636238 EVA1CP58658 441 aa10.78□□□□□ -0.68
CIITA-214ENST00000636238 USP19O94966 1318 aa10.78□□□□□ -0.68
CIITA-214ENST00000636238 BCL9O00512 1426 aa10.77□□□□□ -0.68
CIITA-214ENST00000636238 PLEKHG3A1L390 1219 aa10.77□□□□□ -0.69
CIITA-214ENST00000636238 NUDT16Q96DE0 195 aaKnown RBP10.77□□□□□ -0.69
CIITA-214ENST00000636238 TRAK1Q9UPV9 953 aa10.77□□□□□ -0.69
CIITA-214ENST00000636238 CRYBG1Q9Y4K1 1723 aa10.77□□□□□ -0.69
CIITA-214ENST00000636238 MINK1Q8N4C8 1332 aaPredicted RBP10.77□□□□□ -0.69
CIITA-214ENST00000636238 RREB1Q92766 1687 aa10.76□□□□□ -0.69
CIITA-214ENST00000636238 HIRIP3Q9BW71 556 aaPredicted RBP10.76□□□□□ -0.69
CIITA-214ENST00000636238 CDCA7Q9BWT1 371 aaPredicted RBP10.76□□□□□ -0.69
CIITA-214ENST00000636238 STRN4Q9NRL3 753 aa10.76□□□□□ -0.69
CIITA-214ENST00000636238 CCDC61Q9Y6R9 512 aa10.76□□□□□ -0.69
CIITA-214ENST00000636238 OVOS2A0A0G2JMS6 1433 aa10.75□□□□□ -0.69
CIITA-214ENST00000636238 OVOS2A0A0J9YW53 1432 aa10.75□□□□□ -0.69
CIITA-214ENST00000636238 OVOS2Q6IE36 1432 aa10.75□□□□□ -0.69
CIITA-214ENST00000636238 CHRNA2Q15822 529 aa10.75□□□□□ -0.69
CIITA-214ENST00000636238 ZC3H6P61129 1189 aaKnown RBP10.74□□□□□ -0.69
CIITA-214ENST00000636238 NLRP13Q86W25 1043 aa10.74□□□□□ -0.69
CIITA-214ENST00000636238 BCL11BQ9C0K0 894 aaPredicted RBP10.74□□□□□ -0.69
CIITA-214ENST00000636238 RGPD8O14715 1765 aaPredicted RBP10.74□□□□□ -0.69
CIITA-214ENST00000636238 CRB1P82279 1406 aa10.74□□□□□ -0.69
CIITA-214ENST00000636238 LARP1Q6PKG0 1096 aaKnown RBP10.73□□□□□ -0.69
CIITA-214ENST00000636238 RGPD3A6NKT7 1758 aaPredicted RBP10.72□□□□□ -0.69
CIITA-214ENST00000636238 RGPD4Q7Z3J3 1758 aa10.72□□□□□ -0.69
CIITA-214ENST00000636238 GCP02774 474 aa10.72□□□□□ -0.69
CIITA-214ENST00000636238 ABTB2Q8N961 1025 aa10.72□□□□□ -0.69
CIITA-214ENST00000636238 CCER1Q8TC90 406 aaPredicted RBP10.72□□□□□ -0.69
CIITA-214ENST00000636238 USP35Q9P2H5 1018 aa10.72□□□□□ -0.69
CIITA-214ENST00000636238 ACEP12821 1306 aa10.72□□□□□ -0.69
CIITA-214ENST00000636238 AATKQ6ZMQ8 1374 aa10.72□□□□□ -0.69
CIITA-214ENST00000636238 PHRF1Q9P1Y6 1649 aaKnown RBP10.72□□□□□ -0.69
CIITA-214ENST00000636238 CAMTA1Q9Y6Y1 1673 aa10.72□□□□□ -0.69
CIITA-214ENST00000636238 ITSN1Q15811 1721 aa10.72□□□□□ -0.69
CIITA-214ENST00000636238 NUP188Q5SRE5 1749 aa10.72□□□□□ -0.69
CIITA-214ENST00000636238 COL5A2P05997 1499 aaPredicted RBP10.71□□□□□ -0.69
CIITA-214ENST00000636238 NRKQ7Z2Y5 1582 aa10.71□□□□□ -0.69
CIITA-214ENST00000636238 LMO7Q8WWI1 1683 aa10.71□□□□□ -0.69
CIITA-214ENST00000636238 CDK19Q9BWU1 502 aa10.71□□□□□ -0.69
CIITA-214ENST00000636238 MAP3K5Q99683 1374 aa10.7□□□□□ -0.7
CIITA-214ENST00000636238 DDB1Q16531 1140 aa10.7□□□□□ -0.7
CIITA-214ENST00000636238 DCAF11Q8TEB1 546 aa10.7□□□□□ -0.7
CIITA-214ENST00000636238 PARP4Q9UKK3 1724 aaKnown RBP10.7□□□□□ -0.7
CIITA-214ENST00000636238 RAB3GAP2Q9H2M9 1393 aa10.69□□□□□ -0.7
CIITA-214ENST00000636238 ZNF784Q8NCA9 323 aaPredicted RBP10.68□□□□□ -0.7
CIITA-214ENST00000636238 PTGER2P43116 358 aa10.67□□□□□ -0.7
CIITA-214ENST00000636238 MTFR1LQ9H019 292 aa10.67□□□□□ -0.7
CIITA-214ENST00000636238 ANO8Q9HCE9 1232 aaPredicted RBP10.67□□□□□ -0.7
CIITA-214ENST00000636238 STK32BQ9NY57 414 aa10.67□□□□□ -0.7
CIITA-214ENST00000636238 PEAK1Q9H792 1746 aa10.67□□□□□ -0.7
CIITA-214ENST00000636238 TOPAZ1Q8N9V7 1692 aa10.66□□□□□ -0.7
CIITA-214ENST00000636238 WDR17Q8IZU2 1322 aa10.66□□□□□ -0.7
CIITA-214ENST00000636238 NUTM2GQ5VZR2 741 aa10.66□□□□□ -0.7
CIITA-214ENST00000636238 SLIT3O75094 1523 aa10.65□□□□□ -0.7
CIITA-214ENST00000636238 SLC15A2Q16348 729 aa10.65□□□□□ -0.7
CIITA-214ENST00000636238 TOM1L2Q6ZVM7 507 aa10.65□□□□□ -0.7
CIITA-214ENST00000636238 KCNH5Q8NCM2 988 aa10.65□□□□□ -0.7
CIITA-214ENST00000636238 SYT17Q9BSW7 474 aa10.65□□□□□ -0.7
CIITA-214ENST00000636238 CARD10Q9BWT7 1032 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms