RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 KCNQ2O43526 872 aa27.44■■□□□ 1.98
CLK3-227ENST00000570296 IFFO2Q5TF58 517 aa27.44■■□□□ 1.98
CLK3-227ENST00000570296 TMEM132EQ6IEE7 984 aa27.44■■□□□ 1.98
CLK3-227ENST00000570296 CAMTA1Q9Y6Y1 1673 aa27.43■■□□□ 1.98
CLK3-227ENST00000570296 ANKRD30BQ9BXX2 1392 aa27.41■■□□□ 1.98
CLK3-227ENST00000570296 SPATA31A1Q5TZJ5 1347 aa27.41■■□□□ 1.98
CLK3-227ENST00000570296 ZNF784Q8NCA9 323 aaPredicted RBP27.4■■□□□ 1.98
CLK3-227ENST00000570296 CRYBG1Q9Y4K1 1723 aa27.4■■□□□ 1.98
CLK3-227ENST00000570296 ANKARQ7Z5J8 1434 aa27.4■■□□□ 1.98
CLK3-227ENST00000570296 PIK3C2GO75747 1445 aa27.39■■□□□ 1.97
CLK3-227ENST00000570296 UTRNP46939 3433 aa27.37■■□□□ 1.97
CLK3-227ENST00000570296 SENP3-EIF4A1A0A087X0R7 540 aa27.37■■□□□ 1.97
CLK3-227ENST00000570296 PMFBP1Q8TBY8 1022 aa27.35■■□□□ 1.97
CLK3-227ENST00000570296 PRDM11Q9NQV5 511 aa27.35■■□□□ 1.97
CLK3-227ENST00000570296 GPRASP1Q5JY77 1395 aa27.34■■□□□ 1.97
CLK3-227ENST00000570296 SPATA31E1Q6ZUB1 1445 aa27.33■■□□□ 1.96
CLK3-227ENST00000570296 SLC4A1APQ9BWU0 796 aaKnown RBP27.32■■□□□ 1.96
CLK3-227ENST00000570296 PDE3BQ13370 1112 aa27.3■■□□□ 1.96
CLK3-227ENST00000570296 CHD4Q14839 1912 aa27.29■■□□□ 1.96
CLK3-227ENST00000570296 RGPD3A6NKT7 1758 aaPredicted RBP27.28■■□□□ 1.96
CLK3-227ENST00000570296 RGPD4Q7Z3J3 1758 aa27.28■■□□□ 1.96
CLK3-227ENST00000570296 ACIN1Q9UKV3 1341 aaKnown RBP27.28■■□□□ 1.96
CLK3-227ENST00000570296 C1QTNF8P60827 252 aa27.28■■□□□ 1.96
CLK3-227ENST00000570296 RGL3Q3MIN7 710 aa27.28■■□□□ 1.96
CLK3-227ENST00000570296 BARGINQ6ZT62 677 aa27.28■■□□□ 1.96
CLK3-227ENST00000570296 NRKQ7Z2Y5 1582 aa27.27■■□□□ 1.96
CLK3-227ENST00000570296 CASZ1Q86V15 1759 aa27.27■■□□□ 1.96
CLK3-227ENST00000570296 DHX57Q6P158 1386 aaKnown RBP27.26■■□□□ 1.95
CLK3-227ENST00000570296 PRAM1Q96QH2 718 aa27.26■■□□□ 1.95
CLK3-227ENST00000570296 KIAA0232Q92628 1395 aa27.25■■□□□ 1.95
CLK3-227ENST00000570296 C14orf93Q9H972 538 aaKnown RBP27.24■■□□□ 1.95
CLK3-227ENST00000570296 STRN4Q9NRL3 753 aa27.24■■□□□ 1.95
CLK3-227ENST00000570296 SAFB2Q14151 953 aaKnown RBP eCLIP27.23■■□□□ 1.95
CLK3-227ENST00000570296 EIF3AQ14152 1382 aaKnown RBP27.22■■□□□ 1.95
CLK3-227ENST00000570296 DLC1Q96QB1 1528 aa27.22■■□□□ 1.95
CLK3-227ENST00000570296 PHRF1Q9P1Y6 1649 aaKnown RBP27.21■■□□□ 1.95
CLK3-227ENST00000570296 C11orf95C9JLR9 678 aaPredicted RBP27.21■■□□□ 1.95
CLK3-227ENST00000570296 SSH2Q76I76 1423 aa27.2■■□□□ 1.94
CLK3-227ENST00000570296 USP35Q9P2H5 1018 aa27.2■■□□□ 1.94
CLK3-227ENST00000570296 MYOM1P52179 1685 aa27.2■■□□□ 1.94
CLK3-227ENST00000570296 CHRNA2Q15822 529 aa27.19■■□□□ 1.94
CLK3-227ENST00000570296 POGKQ9P215 609 aa27.18■■□□□ 1.94
CLK3-227ENST00000570296 TULP4Q9NRJ4 1543 aa27.17■■□□□ 1.94
CLK3-227ENST00000570296 PAK3O75914 559 aaPredicted RBP27.17■■□□□ 1.94
CLK3-227ENST00000570296 PARP4Q9UKK3 1724 aaKnown RBP27.16■■□□□ 1.94
CLK3-227ENST00000570296 TCP11L2Q8N4U5 519 aa27.15■■□□□ 1.94
CLK3-227ENST00000570296 PRR36Q9H6K5 1346 aa27.15■■□□□ 1.94
CLK3-227ENST00000570296 CEP350Q5VT06 3117 aa27.14■■□□□ 1.94
CLK3-227ENST00000570296 PLSCR1O15162 318 aa27.14■■□□□ 1.94
CLK3-227ENST00000570296 EVA1CP58658 441 aa27.14■■□□□ 1.94
CLK3-227ENST00000570296 NGDNQ8NEJ9 315 aaKnown RBP27.14■■□□□ 1.94
CLK3-227ENST00000570296 ANO8Q9HCE9 1232 aaPredicted RBP27.14■■□□□ 1.94
CLK3-227ENST00000570296 CFAP70Q5T0N1 1121 aa27.13■■□□□ 1.93
CLK3-227ENST00000570296 SBF2Q86WG5 1849 aa27.12■■□□□ 1.93
CLK3-227ENST00000570296 PTGER2P43116 358 aa27.12■■□□□ 1.93
CLK3-227ENST00000570296 THRAP3Q9Y2W1 955 aaKnown RBP27.12■■□□□ 1.93
CLK3-227ENST00000570296 PEAK1Q9H792 1746 aa27.12■■□□□ 1.93
CLK3-227ENST00000570296 ATP7BP35670 1465 aa27.12■■□□□ 1.93
CLK3-227ENST00000570296 ZC3H6P61129 1189 aaKnown RBP27.11■■□□□ 1.93
CLK3-227ENST00000570296 OVOS2A0A0G2JMS6 1433 aa27.1■■□□□ 1.93
CLK3-227ENST00000570296 OVOS2A0A0J9YW53 1432 aa27.1■■□□□ 1.93
CLK3-227ENST00000570296 OVOS2Q6IE36 1432 aa27.1■■□□□ 1.93
CLK3-227ENST00000570296 ZBTB7AO95365 584 aa27.09■■□□□ 1.93
CLK3-227ENST00000570296 LARP1Q6PKG0 1096 aaKnown RBP27.09■■□□□ 1.93
CLK3-227ENST00000570296 SYT17Q9BSW7 474 aa27.09■■□□□ 1.93
CLK3-227ENST00000570296 LMO7Q8WWI1 1683 aa27.08■■□□□ 1.93
CLK3-227ENST00000570296 ITSN1Q15811 1721 aa27.08■■□□□ 1.93
CLK3-227ENST00000570296 HIRIP3Q9BW71 556 aaPredicted RBP27.08■■□□□ 1.93
CLK3-227ENST00000570296 FHDC1Q9C0D6 1143 aaPredicted RBP27.07■■□□□ 1.92
CLK3-227ENST00000570296 PDGFDQ9GZP0 370 aaPredicted RBP27.07■■□□□ 1.92
CLK3-227ENST00000570296 WASLO00401 505 aaPredicted RBP27.05■■□□□ 1.92
CLK3-227ENST00000570296 BCL11BQ9C0K0 894 aaPredicted RBP27.04■■□□□ 1.92
CLK3-227ENST00000570296 CPDO75976 1380 aa27.03■■□□□ 1.92
CLK3-227ENST00000570296 MINK1Q8N4C8 1332 aaPredicted RBP27.03■■□□□ 1.92
CLK3-227ENST00000570296 ATF5Q9Y2D1 282 aaPredicted RBP27.03■■□□□ 1.92
CLK3-227ENST00000570296 ADGRB1O14514 1584 aa27.02■■□□□ 1.92
CLK3-227ENST00000570296 GIGYF1O75420 1035 aaPredicted RBP27.01■■□□□ 1.91
CLK3-227ENST00000570296 LRRC37A3O60309 1634 aa26.99■■□□□ 1.91
CLK3-227ENST00000570296 MTFR1LQ9H019 292 aa26.98■■□□□ 1.91
CLK3-227ENST00000570296 NUTM2GQ5VZR2 741 aa26.97■■□□□ 1.91
CLK3-227ENST00000570296 PROM2Q8N271 834 aa26.97■■□□□ 1.91
CLK3-227ENST00000570296 SGIP1Q9BQI5 828 aa26.97■■□□□ 1.91
CLK3-227ENST00000570296 STK32BQ9NY57 414 aa26.97■■□□□ 1.91
CLK3-227ENST00000570296 MAP3K5Q99683 1374 aa26.97■■□□□ 1.91
CLK3-227ENST00000570296 COL5A2P05997 1499 aaPredicted RBP26.96■■□□□ 1.91
CLK3-227ENST00000570296 PPARGC1BQ86YN6 1023 aaKnown RBP26.96■■□□□ 1.91
CLK3-227ENST00000570296 TRAK1Q9UPV9 953 aa26.96■■□□□ 1.91
CLK3-227ENST00000570296 CRB1P82279 1406 aa26.96■■□□□ 1.91
CLK3-227ENST00000570296 BCL9O00512 1426 aa26.93■■□□□ 1.9
CLK3-227ENST00000570296 SLC15A2Q16348 729 aa26.93■■□□□ 1.9
CLK3-227ENST00000570296 MPHOSPH9Q99550 1183 aa26.93■■□□□ 1.9
CLK3-227ENST00000570296 USP19O94966 1318 aa26.92■■□□□ 1.9
CLK3-227ENST00000570296 DDB1Q16531 1140 aa26.92■■□□□ 1.9
CLK3-227ENST00000570296 PTF1AQ7RTS3 328 aa26.92■■□□□ 1.9
CLK3-227ENST00000570296 NUDT16Q96DE0 195 aaKnown RBP26.92■■□□□ 1.9
CLK3-227ENST00000570296 POLR3AO14802 1390 aaPredicted RBP26.92■■□□□ 1.9
CLK3-227ENST00000570296 AKAP12Q02952 1782 aa26.9■■□□□ 1.9
CLK3-227ENST00000570296 ARXQ96QS3 562 aa26.9■■□□□ 1.9
CLK3-227ENST00000570296 TOPAZ1Q8N9V7 1692 aa26.89■■□□□ 1.89
CLK3-227ENST00000570296 WNK3Q9BYP7 1800 aa26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms