RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 DHX57Q6P158 1386 aaKnown RBP25.25■■□□□ 1.63
CDH3-205ENST00000566808 GPRASP1Q5JY77 1395 aa25.24■■□□□ 1.63
CDH3-205ENST00000566808 CAMKK2Q96RR4 588 aa25.24■■□□□ 1.63
CDH3-205ENST00000566808 PMFBP1Q8TBY8 1022 aa25.23■■□□□ 1.63
CDH3-205ENST00000566808 EIF3AQ14152 1382 aaKnown RBP25.21■■□□□ 1.63
CDH3-205ENST00000566808 FAM196AQ6ZSG2 479 aa25.21■■□□□ 1.63
CDH3-205ENST00000566808 PRAM1Q96QH2 718 aa25.21■■□□□ 1.63
CDH3-205ENST00000566808 C14orf93Q9H972 538 aaKnown RBP25.21■■□□□ 1.63
CDH3-205ENST00000566808 PHRF1Q9P1Y6 1649 aaKnown RBP25.21■■□□□ 1.63
CDH3-205ENST00000566808 TULP4Q9NRJ4 1543 aa25.21■■□□□ 1.63
CDH3-205ENST00000566808 SAFB2Q14151 953 aaKnown RBP eCLIP25.2■■□□□ 1.62
CDH3-205ENST00000566808 TRIM37O94972 964 aa25.19■■□□□ 1.62
CDH3-205ENST00000566808 SPATA31A1Q5TZJ5 1347 aa25.18■■□□□ 1.62
CDH3-205ENST00000566808 ACIN1Q9UKV3 1341 aaKnown RBP25.18■■□□□ 1.62
CDH3-205ENST00000566808 ITSN1Q15811 1721 aa25.18■■□□□ 1.62
CDH3-205ENST00000566808 PRDM11Q9NQV5 511 aa25.18■■□□□ 1.62
CDH3-205ENST00000566808 NINLQ9Y2I6 1382 aa25.16■■□□□ 1.62
CDH3-205ENST00000566808 APBA3O96018 575 aa25.15■■□□□ 1.62
CDH3-205ENST00000566808 CFAP70Q5T0N1 1121 aa25.14■■□□□ 1.62
CDH3-205ENST00000566808 POGKQ9P215 609 aa25.14■■□□□ 1.62
CDH3-205ENST00000566808 ADGRB1O14514 1584 aa25.14■■□□□ 1.61
CDH3-205ENST00000566808 KIAA0232Q92628 1395 aa25.12■■□□□ 1.61
CDH3-205ENST00000566808 RGPD3A6NKT7 1758 aaPredicted RBP25.12■■□□□ 1.61
CDH3-205ENST00000566808 RGPD4Q7Z3J3 1758 aa25.12■■□□□ 1.61
CDH3-205ENST00000566808 ATP7BP35670 1465 aa25.11■■□□□ 1.61
CDH3-205ENST00000566808 NBPF8Q3BBV2 869 aa25.11■■□□□ 1.61
CDH3-205ENST00000566808 NBPF14Q5TI25 921 aa25.11■■□□□ 1.61
CDH3-205ENST00000566808 PRR36Q9H6K5 1346 aa25.11■■□□□ 1.61
CDH3-205ENST00000566808 PPP1R1BQ9UD71 204 aaPredicted RBP25.1■■□□□ 1.61
CDH3-205ENST00000566808 DCAF8L1A6NGE4 600 aa25.09■■□□□ 1.61
CDH3-205ENST00000566808 SPON1Q9HCB6 807 aa25.09■■□□□ 1.61
CDH3-205ENST00000566808 CAMTA1Q9Y6Y1 1673 aa25.08■■□□□ 1.61
CDH3-205ENST00000566808 MPHOSPH9Q99550 1183 aa25.08■■□□□ 1.61
CDH3-205ENST00000566808 SSH2Q76I76 1423 aa25.07■■□□□ 1.6
CDH3-205ENST00000566808 PARP4Q9UKK3 1724 aaKnown RBP25.06■■□□□ 1.6
CDH3-205ENST00000566808 PAK3O75914 559 aaPredicted RBP25.06■■□□□ 1.6
CDH3-205ENST00000566808 BARGINQ6ZT62 677 aa25.06■■□□□ 1.6
CDH3-205ENST00000566808 NGDNQ8NEJ9 315 aaKnown RBP25.06■■□□□ 1.6
CDH3-205ENST00000566808 HIRIP3Q9BW71 556 aaPredicted RBP25.06■■□□□ 1.6
CDH3-205ENST00000566808 STRN4Q9NRL3 753 aa25.06■■□□□ 1.6
CDH3-205ENST00000566808 NRKQ7Z2Y5 1582 aa25.05■■□□□ 1.6
CDH3-205ENST00000566808 LMO7Q8WWI1 1683 aa25.04■■□□□ 1.6
CDH3-205ENST00000566808 PDE3BQ13370 1112 aa25.04■■□□□ 1.6
CDH3-205ENST00000566808 CHRNA2Q15822 529 aa25.04■■□□□ 1.6
CDH3-205ENST00000566808 MINK1Q8N4C8 1332 aaPredicted RBP25.04■■□□□ 1.6
CDH3-205ENST00000566808 CASZ1Q86V15 1759 aa25.03■■□□□ 1.6
CDH3-205ENST00000566808 KCNQ2O43526 872 aa25.03■■□□□ 1.6
CDH3-205ENST00000566808 WASLO00401 505 aaPredicted RBP25.02■■□□□ 1.6
CDH3-205ENST00000566808 USP35Q9P2H5 1018 aa25.01■■□□□ 1.59
CDH3-205ENST00000566808 TOPAZ1Q8N9V7 1692 aa25.01■■□□□ 1.59
CDH3-205ENST00000566808 ARHGEF28Q8N1W1 1705 aaKnown RBP25■■□□□ 1.59
CDH3-205ENST00000566808 PEAK1Q9H792 1746 aa25■■□□□ 1.59
CDH3-205ENST00000566808 TRAK1Q9UPV9 953 aa24.99■■□□□ 1.59
CDH3-205ENST00000566808 SBF2Q86WG5 1849 aa24.98■■□□□ 1.59
CDH3-205ENST00000566808 ZC3H6P61129 1189 aaKnown RBP24.97■■□□□ 1.59
CDH3-205ENST00000566808 UTRNP46939 3433 aa24.97■■□□□ 1.59
CDH3-205ENST00000566808 C11orf95C9JLR9 678 aaPredicted RBP24.96■■□□□ 1.59
CDH3-205ENST00000566808 TCP11L2Q8N4U5 519 aa24.96■■□□□ 1.59
CDH3-205ENST00000566808 MYOM1P52179 1685 aa24.95■■□□□ 1.58
CDH3-205ENST00000566808 EVA1CP58658 441 aa24.95■■□□□ 1.58
CDH3-205ENST00000566808 OVOS2A0A0G2JMS6 1433 aa24.95■■□□□ 1.58
CDH3-205ENST00000566808 OVOS2A0A0J9YW53 1432 aa24.95■■□□□ 1.58
CDH3-205ENST00000566808 OVOS2Q6IE36 1432 aa24.95■■□□□ 1.58
CDH3-205ENST00000566808 CPDO75976 1380 aa24.94■■□□□ 1.58
CDH3-205ENST00000566808 LRRC37A3O60309 1634 aa24.94■■□□□ 1.58
CDH3-205ENST00000566808 LARP1Q6PKG0 1096 aaKnown RBP24.93■■□□□ 1.58
CDH3-205ENST00000566808 THRAP3Q9Y2W1 955 aaKnown RBP24.93■■□□□ 1.58
CDH3-205ENST00000566808 CHD4Q14839 1912 aa24.92■■□□□ 1.58
CDH3-205ENST00000566808 POLR3AO14802 1390 aaPredicted RBP24.92■■□□□ 1.58
CDH3-205ENST00000566808 COL5A2P05997 1499 aaPredicted RBP24.91■■□□□ 1.58
CDH3-205ENST00000566808 WNK3Q9BYP7 1800 aa24.91■■□□□ 1.58
CDH3-205ENST00000566808 USP19O94966 1318 aa24.88■■□□□ 1.57
CDH3-205ENST00000566808 NUTM2GQ5VZR2 741 aa24.88■■□□□ 1.57
CDH3-205ENST00000566808 ZNF784Q8NCA9 323 aaPredicted RBP24.88■■□□□ 1.57
CDH3-205ENST00000566808 NUDT16Q96DE0 195 aaKnown RBP24.88■■□□□ 1.57
CDH3-205ENST00000566808 AKAP12Q02952 1782 aa24.87■■□□□ 1.57
CDH3-205ENST00000566808 PLSCR1O15162 318 aa24.86■■□□□ 1.57
CDH3-205ENST00000566808 ANO8Q9HCE9 1232 aaPredicted RBP24.86■■□□□ 1.57
CDH3-205ENST00000566808 CRB1P82279 1406 aa24.86■■□□□ 1.57
CDH3-205ENST00000566808 ACEP12821 1306 aa24.82■■□□□ 1.56
CDH3-205ENST00000566808 ABTB2Q8N961 1025 aa24.81■■□□□ 1.56
CDH3-205ENST00000566808 SENP3-EIF4A1A0A087X0R7 540 aa24.79■■□□□ 1.56
CDH3-205ENST00000566808 ZBTB7AO95365 584 aa24.78■■□□□ 1.56
CDH3-205ENST00000566808 PTGER2P43116 358 aa24.78■■□□□ 1.56
CDH3-205ENST00000566808 BCL11BQ9C0K0 894 aaPredicted RBP24.78■■□□□ 1.56
CDH3-205ENST00000566808 BCL9O00512 1426 aa24.78■■□□□ 1.56
CDH3-205ENST00000566808 PDGFDQ9GZP0 370 aaPredicted RBP24.77■■□□□ 1.56
CDH3-205ENST00000566808 CCDC61Q9Y6R9 512 aa24.77■■□□□ 1.56
CDH3-205ENST00000566808 PLEKHG3A1L390 1219 aa24.76■■□□□ 1.55
CDH3-205ENST00000566808 STAC3Q96MF2 364 aa24.76■■□□□ 1.55
CDH3-205ENST00000566808 CDK19Q9BWU1 502 aa24.76■■□□□ 1.55
CDH3-205ENST00000566808 GCP02774 474 aa24.75■■□□□ 1.55
CDH3-205ENST00000566808 DDB1Q16531 1140 aa24.75■■□□□ 1.55
CDH3-205ENST00000566808 NLRP13Q86W25 1043 aa24.75■■□□□ 1.55
CDH3-205ENST00000566808 SLIT3O75094 1523 aa24.75■■□□□ 1.55
CDH3-205ENST00000566808 DCAF11Q8TEB1 546 aa24.74■■□□□ 1.55
CDH3-205ENST00000566808 COL18A1P39060 1754 aa24.73■■□□□ 1.55
CDH3-205ENST00000566808 AATKQ6ZMQ8 1374 aa24.73■■□□□ 1.55
CDH3-205ENST00000566808 KDM2AQ9Y2K7 1162 aa24.73■■□□□ 1.55
CDH3-205ENST00000566808 KIAA1210Q9ULL0 1709 aa24.72■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms