RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CFAP70Q5T0N1 1121 aa10.93□□□□□ -0.66
VPS4A-203ENST00000564399 FAM196AQ6ZSG2 479 aa10.93□□□□□ -0.66
VPS4A-203ENST00000564399 CAMKK2Q96RR4 588 aa10.93□□□□□ -0.66
VPS4A-203ENST00000564399 PRDM11Q9NQV5 511 aa10.93□□□□□ -0.66
VPS4A-203ENST00000564399 ADGRB2O60241 1585 aa10.92□□□□□ -0.66
VPS4A-203ENST00000564399 DCAF8L1A6NGE4 600 aa10.92□□□□□ -0.66
VPS4A-203ENST00000564399 STRN4Q9NRL3 753 aa10.92□□□□□ -0.66
VPS4A-203ENST00000564399 PPP1R1BQ9UD71 204 aaPredicted RBP10.92□□□□□ -0.66
VPS4A-203ENST00000564399 ANKARQ7Z5J8 1434 aa10.92□□□□□ -0.66
VPS4A-203ENST00000564399 NBPF8Q3BBV2 869 aa10.91□□□□□ -0.66
VPS4A-203ENST00000564399 NBPF14Q5TI25 921 aa10.91□□□□□ -0.66
VPS4A-203ENST00000564399 HIRIP3Q9BW71 556 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-203ENST00000564399 TRPM3Q9HCF6 1732 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-203ENST00000564399 THSD7AQ9UPZ6 1657 aa10.91□□□□□ -0.66
VPS4A-203ENST00000564399 ACIN1Q9UKV3 1341 aaKnown RBP10.9□□□□□ -0.66
VPS4A-203ENST00000564399 ALS2Q96Q42 1657 aa10.9□□□□□ -0.66
VPS4A-203ENST00000564399 NGDNQ8NEJ9 315 aaKnown RBP10.9□□□□□ -0.66
VPS4A-203ENST00000564399 MPHOSPH9Q99550 1183 aa10.9□□□□□ -0.66
VPS4A-203ENST00000564399 USP35Q9P2H5 1018 aa10.9□□□□□ -0.66
VPS4A-203ENST00000564399 PARD3Q8TEW0 1356 aa10.9□□□□□ -0.67
VPS4A-203ENST00000564399 SPATA31A1Q5TZJ5 1347 aa10.89□□□□□ -0.67
VPS4A-203ENST00000564399 MINK1Q8N4C8 1332 aaPredicted RBP10.89□□□□□ -0.67
VPS4A-203ENST00000564399 PDE3BQ13370 1112 aa10.89□□□□□ -0.67
VPS4A-203ENST00000564399 CHRNA2Q15822 529 aa10.89□□□□□ -0.67
VPS4A-203ENST00000564399 EVA1CP58658 441 aa10.88□□□□□ -0.67
VPS4A-203ENST00000564399 SPON1Q9HCB6 807 aa10.88□□□□□ -0.67
VPS4A-203ENST00000564399 TRAK1Q9UPV9 953 aa10.88□□□□□ -0.67
VPS4A-203ENST00000564399 EIF3AQ14152 1382 aaKnown RBP10.88□□□□□ -0.67
VPS4A-203ENST00000564399 KIAA0232Q92628 1395 aa10.88□□□□□ -0.67
VPS4A-203ENST00000564399 ZC3H6P61129 1189 aaKnown RBP10.87□□□□□ -0.67
VPS4A-203ENST00000564399 PRR36Q9H6K5 1346 aa10.86□□□□□ -0.67
VPS4A-203ENST00000564399 DLC1Q96QB1 1528 aa10.86□□□□□ -0.67
VPS4A-203ENST00000564399 NUP188Q5SRE5 1749 aa10.86□□□□□ -0.67
VPS4A-203ENST00000564399 CRYBG1Q9Y4K1 1723 aa10.86□□□□□ -0.67
VPS4A-203ENST00000564399 RREB1Q92766 1687 aa10.85□□□□□ -0.67
VPS4A-203ENST00000564399 WASLO00401 505 aaPredicted RBP10.85□□□□□ -0.67
VPS4A-203ENST00000564399 KCNQ2O43526 872 aa10.85□□□□□ -0.67
VPS4A-203ENST00000564399 IFFO2Q5TF58 517 aa10.85□□□□□ -0.67
VPS4A-203ENST00000564399 NUTM2GQ5VZR2 741 aa10.85□□□□□ -0.67
VPS4A-203ENST00000564399 TULP4Q9NRJ4 1543 aa10.84□□□□□ -0.67
VPS4A-203ENST00000564399 BARGINQ6ZT62 677 aa10.84□□□□□ -0.67
VPS4A-203ENST00000564399 NINLQ9Y2I6 1382 aa10.83□□□□□ -0.68
VPS4A-203ENST00000564399 SSH2Q76I76 1423 aa10.83□□□□□ -0.68
VPS4A-203ENST00000564399 LARP1Q6PKG0 1096 aaKnown RBP10.82□□□□□ -0.68
VPS4A-203ENST00000564399 TCP11L2Q8N4U5 519 aa10.82□□□□□ -0.68
VPS4A-203ENST00000564399 KDM2AQ9Y2K7 1162 aa10.82□□□□□ -0.68
VPS4A-203ENST00000564399 ITSN1Q15811 1721 aa10.81□□□□□ -0.68
VPS4A-203ENST00000564399 PHRF1Q9P1Y6 1649 aaKnown RBP10.81□□□□□ -0.68
VPS4A-203ENST00000564399 NUDT16Q96DE0 195 aaKnown RBP10.81□□□□□ -0.68
VPS4A-203ENST00000564399 CAMTA1Q9Y6Y1 1673 aa10.8□□□□□ -0.68
VPS4A-203ENST00000564399 ADGRB1O14514 1584 aa10.8□□□□□ -0.68
VPS4A-203ENST00000564399 C11orf95C9JLR9 678 aaPredicted RBP10.79□□□□□ -0.68
VPS4A-203ENST00000564399 ABTB2Q8N961 1025 aa10.79□□□□□ -0.68
VPS4A-203ENST00000564399 THRAP3Q9Y2W1 955 aaKnown RBP10.79□□□□□ -0.68
VPS4A-203ENST00000564399 ATP7BP35670 1465 aa10.79□□□□□ -0.68
VPS4A-203ENST00000564399 ZBTB7CA1YPR0 619 aa10.78□□□□□ -0.68
VPS4A-203ENST00000564399 BCL11BQ9C0K0 894 aaPredicted RBP10.78□□□□□ -0.68
VPS4A-203ENST00000564399 ZNF784Q8NCA9 323 aaPredicted RBP10.77□□□□□ -0.69
VPS4A-203ENST00000564399 DCAF11Q8TEB1 546 aa10.77□□□□□ -0.69
VPS4A-203ENST00000564399 CDK19Q9BWU1 502 aa10.77□□□□□ -0.69
VPS4A-203ENST00000564399 CHD4Q14839 1912 aa10.77□□□□□ -0.69
VPS4A-203ENST00000564399 ACEP12821 1306 aa10.77□□□□□ -0.69
VPS4A-203ENST00000564399 SBF2Q86WG5 1849 aa10.77□□□□□ -0.69
VPS4A-203ENST00000564399 KAT6BQ8WYB5 2073 aa10.77□□□□□ -0.69
VPS4A-203ENST00000564399 OVOS2A0A0G2JMS6 1433 aa10.76□□□□□ -0.69
VPS4A-203ENST00000564399 OVOS2A0A0J9YW53 1432 aa10.76□□□□□ -0.69
VPS4A-203ENST00000564399 OVOS2Q6IE36 1432 aa10.76□□□□□ -0.69
VPS4A-203ENST00000564399 PARP4Q9UKK3 1724 aaKnown RBP10.76□□□□□ -0.69
VPS4A-203ENST00000564399 SENP3-EIF4A1A0A087X0R7 540 aa10.76□□□□□ -0.69
VPS4A-203ENST00000564399 PLSCR1O15162 318 aa10.76□□□□□ -0.69
VPS4A-203ENST00000564399 ZBTB7AO95365 584 aa10.76□□□□□ -0.69
VPS4A-203ENST00000564399 ANO8Q9HCE9 1232 aaPredicted RBP10.76□□□□□ -0.69
VPS4A-203ENST00000564399 NRKQ7Z2Y5 1582 aa10.75□□□□□ -0.69
VPS4A-203ENST00000564399 DDB1Q16531 1140 aa10.75□□□□□ -0.69
VPS4A-203ENST00000564399 NLRP13Q86W25 1043 aa10.75□□□□□ -0.69
VPS4A-203ENST00000564399 PDGFDQ9GZP0 370 aaPredicted RBP10.75□□□□□ -0.69
VPS4A-203ENST00000564399 ATF5Q9Y2D1 282 aaPredicted RBP10.75□□□□□ -0.69
VPS4A-203ENST00000564399 CCDC61Q9Y6R9 512 aa10.75□□□□□ -0.69
VPS4A-203ENST00000564399 CPDO75976 1380 aa10.75□□□□□ -0.69
VPS4A-203ENST00000564399 LMO7Q8WWI1 1683 aa10.74□□□□□ -0.69
VPS4A-203ENST00000564399 GCP02774 474 aa10.74□□□□□ -0.69
VPS4A-203ENST00000564399 ARHGEF28Q8N1W1 1705 aaKnown RBP10.74□□□□□ -0.69
VPS4A-203ENST00000564399 RGPD3A6NKT7 1758 aaPredicted RBP10.74□□□□□ -0.69
VPS4A-203ENST00000564399 RGPD4Q7Z3J3 1758 aa10.74□□□□□ -0.69
VPS4A-203ENST00000564399 POLR3AO14802 1390 aaPredicted RBP10.74□□□□□ -0.69
VPS4A-203ENST00000564399 CASZ1Q86V15 1759 aa10.73□□□□□ -0.69
VPS4A-203ENST00000564399 PLEKHG3A1L390 1219 aa10.73□□□□□ -0.69
VPS4A-203ENST00000564399 TOM1L2Q6ZVM7 507 aa10.73□□□□□ -0.69
VPS4A-203ENST00000564399 PTF1AQ7RTS3 328 aa10.73□□□□□ -0.69
VPS4A-203ENST00000564399 STK32BQ9NY57 414 aa10.73□□□□□ -0.69
VPS4A-203ENST00000564399 USP19O94966 1318 aa10.73□□□□□ -0.69
VPS4A-203ENST00000564399 CRB1P82279 1406 aa10.73□□□□□ -0.69
VPS4A-203ENST00000564399 COL5A2P05997 1499 aaPredicted RBP10.73□□□□□ -0.69
VPS4A-203ENST00000564399 STAC3Q96MF2 364 aa10.72□□□□□ -0.69
VPS4A-203ENST00000564399 SYT17Q9BSW7 474 aa10.72□□□□□ -0.69
VPS4A-203ENST00000564399 FHDC1Q9C0D6 1143 aaPredicted RBP10.72□□□□□ -0.69
VPS4A-203ENST00000564399 MYOM1P52179 1685 aa10.72□□□□□ -0.69
VPS4A-203ENST00000564399 PEAK1Q9H792 1746 aa10.72□□□□□ -0.69
VPS4A-203ENST00000564399 PTGER2P43116 358 aa10.71□□□□□ -0.69
VPS4A-203ENST00000564399 PROM2Q8N271 834 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms