RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 GAPVD1Q14C86 1478 aa9.93□□□□□ -0.82
VPS35-204ENST00000563884 AMHR2Q16671 573 aa9.93□□□□□ -0.82
VPS35-204ENST00000563884 CTC1Q2NKJ3 1217 aa9.93□□□□□ -0.82
VPS35-204ENST00000563884 NUDT12Q9BQG2 462 aa9.93□□□□□ -0.82
VPS35-204ENST00000563884 DACH1Q9UI36 760 aa9.93□□□□□ -0.82
VPS35-204ENST00000563884 PCDHGC3Q9UN70 934 aa9.93□□□□□ -0.82
VPS35-204ENST00000563884 NDUFV2P19404 249 aa9.92□□□□□ -0.82
VPS35-204ENST00000563884 GIGYF2Q6Y7W6 1299 aaKnown RBP9.92□□□□□ -0.82
VPS35-204ENST00000563884 DNMBPQ6XZF7 1577 aa9.92□□□□□ -0.82
VPS35-204ENST00000563884 SMPD1P17405 629 aa9.91□□□□□ -0.82
VPS35-204ENST00000563884 RC3H1Q5TC82 1133 aaKnown RBP9.91□□□□□ -0.82
VPS35-204ENST00000563884 KDM6BO15054 1643 aa9.91□□□□□ -0.82
VPS35-204ENST00000563884 HECW2Q9P2P5 1572 aa9.91□□□□□ -0.82
VPS35-204ENST00000563884 MOXD2PA6NHM9 499 aa9.9□□□□□ -0.82
VPS35-204ENST00000563884 J3QL48 77 aa9.9□□□□□ -0.82
VPS35-204ENST00000563884 WNT7BP56706 349 aa9.9□□□□□ -0.82
VPS35-204ENST00000563884 MS4A1P11836 297 aa9.89□□□□□ -0.83
VPS35-204ENST00000563884 SMCPP49901 116 aaPredicted RBP9.89□□□□□ -0.83
VPS35-204ENST00000563884 SKOR1P84550 965 aa9.89□□□□□ -0.83
VPS35-204ENST00000563884 BEGAINQ9BUH8 593 aa9.89□□□□□ -0.83
VPS35-204ENST00000563884 AQRO60306 1485 aaKnown RBP eCLIP9.88□□□□□ -0.83
VPS35-204ENST00000563884 LMTK3Q96Q04 1460 aa9.88□□□□□ -0.83
VPS35-204ENST00000563884 PTCRAQ6ISU1 281 aaPredicted RBP9.88□□□□□ -0.83
VPS35-204ENST00000563884 FBXO41Q8TF61 875 aa9.88□□□□□ -0.83
VPS35-204ENST00000563884 GMPR2Q9P2T1 348 aaKnown RBP9.88□□□□□ -0.83
VPS35-204ENST00000563884 C11orf95C9JLR9 678 aaPredicted RBP9.87□□□□□ -0.83
VPS35-204ENST00000563884 MAGI1Q96QZ7 1491 aaPredicted RBP9.86□□□□□ -0.83
VPS35-204ENST00000563884 CCNYL3P0C7X3 344 aa9.86□□□□□ -0.83
VPS35-204ENST00000563884 MTMR2Q13614 643 aa9.86□□□□□ -0.83
VPS35-204ENST00000563884 TRIM66O15016 1216 aa9.85□□□□□ -0.83
VPS35-204ENST00000563884 PARP9Q8IXQ6 854 aa9.85□□□□□ -0.83
VPS35-204ENST00000563884 EHBP1Q8NDI1 1231 aa9.85□□□□□ -0.83
VPS35-204ENST00000563884 PRR7Q8TB68 274 aa9.85□□□□□ -0.83
VPS35-204ENST00000563884 HPS1Q92902 700 aa9.85□□□□□ -0.83
VPS35-204ENST00000563884 TBC1D2Q9BYX2 928 aa9.85□□□□□ -0.83
VPS35-204ENST00000563884 SNAPC4Q5SXM2 1469 aa9.85□□□□□ -0.83
VPS35-204ENST00000563884 SPDYE5A6NIY4 337 aa9.84□□□□□ -0.83
VPS35-204ENST00000563884 ALDH1A1P00352 501 aa9.84□□□□□ -0.83
VPS35-204ENST00000563884 DIXDC1Q155Q3 683 aa9.84□□□□□ -0.83
VPS35-204ENST00000563884 PTPRNQ16849 979 aa9.84□□□□□ -0.83
VPS35-204ENST00000563884 AK7Q96M32 723 aa9.84□□□□□ -0.83
VPS35-204ENST00000563884 UNC93B1Q9H1C4 597 aa9.82□□□□□ -0.84
VPS35-204ENST00000563884 ATP13A2Q9NQ11 1180 aa9.82□□□□□ -0.84
VPS35-204ENST00000563884 EVA1BQ9NVM1 165 aa9.82□□□□□ -0.84
VPS35-204ENST00000563884 SYNJ2O15056 1496 aa9.81□□□□□ -0.84
VPS35-204ENST00000563884 RSBN1LQ6PCB5 846 aaPredicted RBP9.81□□□□□ -0.84
VPS35-204ENST00000563884 CHMP7Q8WUX9 453 aaPredicted RBP9.81□□□□□ -0.84
VPS35-204ENST00000563884 TOP2AP11388 1531 aaKnown RBP9.81□□□□□ -0.84
VPS35-204ENST00000563884 PBRM1Q86U86 1689 aa9.8□□□□□ -0.84
VPS35-204ENST00000563884 SH3BP2P78314 561 aa9.8□□□□□ -0.84
VPS35-204ENST00000563884 KCNH2Q12809 1159 aa9.8□□□□□ -0.84
VPS35-204ENST00000563884 LINC01559Q495D7 138 aa9.8□□□□□ -0.84
VPS35-204ENST00000563884 TSPOAP1O95153 1857 aa9.79□□□□□ -0.84
VPS35-204ENST00000563884 GJA5P36382 358 aa9.79□□□□□ -0.84
VPS35-204ENST00000563884 DESI1Q6ICB0 168 aa9.79□□□□□ -0.84
VPS35-204ENST00000563884 BAP1Q92560 729 aa9.79□□□□□ -0.84
VPS35-204ENST00000563884 PCDHB15Q9Y5E8 787 aa9.79□□□□□ -0.84
VPS35-204ENST00000563884 WASF2Q9Y6W5 498 aa9.79□□□□□ -0.84
VPS35-204ENST00000563884 SIAH2O43255 324 aa9.78□□□□□ -0.84
VPS35-204ENST00000563884 TREML4Q6UXN2 200 aa9.78□□□□□ -0.84
VPS35-204ENST00000563884 SENP2Q9HC62 589 aa9.78□□□□□ -0.84
VPS35-204ENST00000563884 ADGRL1O94910 1474 aa9.78□□□□□ -0.84
VPS35-204ENST00000563884 POLA1P09884 1462 aaPredicted RBP9.78□□□□□ -0.84
VPS35-204ENST00000563884 DIP2BQ9P265 1576 aa9.77□□□□□ -0.85
VPS35-204ENST00000563884 SOCS7O14512 581 aa9.77□□□□□ -0.85
VPS35-204ENST00000563884 SPTLC1O15269 473 aa9.77□□□□□ -0.85
VPS35-204ENST00000563884 CTHP32929 405 aa9.77□□□□□ -0.85
VPS35-204ENST00000563884 CSPP1Q1MSJ5 1256 aa9.76□□□□□ -0.85
VPS35-204ENST00000563884 RIC3Q7Z5B4 369 aa9.76□□□□□ -0.85
VPS35-204ENST00000563884 ZBTB3Q9H5J0 574 aa9.76□□□□□ -0.85
VPS35-204ENST00000563884 GRIN2BQ13224 1484 aa9.75□□□□□ -0.85
VPS35-204ENST00000563884 ABCC10Q5T3U5 1492 aa9.75□□□□□ -0.85
VPS35-204ENST00000563884 SNRPBP14678 240 aaKnown RBP9.75□□□□□ -0.85
VPS35-204ENST00000563884 HRCP23327 699 aa9.75□□□□□ -0.85
VPS35-204ENST00000563884 PDE4DQ08499 809 aa9.75□□□□□ -0.85
VPS35-204ENST00000563884 TRIM47Q96LD4 638 aa9.75□□□□□ -0.85
VPS35-204ENST00000563884 MAPKBP1O60336 1514 aa9.75□□□□□ -0.85
VPS35-204ENST00000563884 CFAP99D6REC4 459 aa9.74□□□□□ -0.85
VPS35-204ENST00000563884 LYPD8Q6UX82 237 aa9.74□□□□□ -0.85
VPS35-204ENST00000563884 ZNF511Q8NB15 262 aa9.74□□□□□ -0.85
VPS35-204ENST00000563884 SLC24A3Q9HC58 644 aa9.74□□□□□ -0.85
VPS35-204ENST00000563884 WFS1O76024 890 aa9.73□□□□□ -0.85
VPS35-204ENST00000563884 CABLES1Q8TDN4 633 aa9.73□□□□□ -0.85
VPS35-204ENST00000563884 KIFC2Q96AC6 838 aa9.73□□□□□ -0.85
VPS35-204ENST00000563884 TLL2Q9Y6L7 1015 aa9.73□□□□□ -0.85
VPS35-204ENST00000563884 CEP170Q5SW79 1584 aa9.72□□□□□ -0.85
VPS35-204ENST00000563884 SHROOM2Q13796 1616 aa9.72□□□□□ -0.85
VPS35-204ENST00000563884 PRPF38BQ5VTL8 546 aaKnown RBP9.72□□□□□ -0.85
VPS35-204ENST00000563884 PLEKHG3A1L390 1219 aa9.71□□□□□ -0.86
VPS35-204ENST00000563884 CAPN5O15484 640 aaPredicted RBP9.71□□□□□ -0.86
VPS35-204ENST00000563884 VARSP26640 1264 aaKnown RBP9.71□□□□□ -0.86
VPS35-204ENST00000563884 TSC1Q92574 1164 aa9.71□□□□□ -0.86
VPS35-204ENST00000563884 NUTM2BA6NNL0 878 aaPredicted RBP9.7□□□□□ -0.86
VPS35-204ENST00000563884 NUTM2EB1AL46 878 aaPredicted RBP9.7□□□□□ -0.86
VPS35-204ENST00000563884 LCE2AQ5TA79 106 aaPredicted RBP9.7□□□□□ -0.86
VPS35-204ENST00000563884 NUTM2DQ5VT03 806 aaPredicted RBP9.7□□□□□ -0.86
VPS35-204ENST00000563884 NUTM2AQ8IVF1 878 aaPredicted RBP9.7□□□□□ -0.86
VPS35-204ENST00000563884 MAP10Q9P2G4 905 aa9.7□□□□□ -0.86
VPS35-204ENST00000563884 TOP2BQ02880 1626 aa9.7□□□□□ -0.86
VPS35-204ENST00000563884 SOGA1O94964 1423 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms