RNA–Protein interactions for RNA: ENST00000560483.1

LRRC28-219, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-219ENST00000560483 NKTRP30414 1462 aaKnown RBP11.56□□□□□ -0.56
LRRC28-219ENST00000560483 SETBP1Q9Y6X0 1596 aa11.55□□□□□ -0.56
LRRC28-219ENST00000560483 IFNLR1Q8IU57 520 aaPredicted RBP11.55□□□□□ -0.56
LRRC28-219ENST00000560483 METP08581 1390 aa11.54□□□□□ -0.56
LRRC28-219ENST00000560483 PIK3R4Q99570 1358 aa11.54□□□□□ -0.56
LRRC28-219ENST00000560483 NRXN3Q9Y4C0 1643 aa11.54□□□□□ -0.56
LRRC28-219ENST00000560483 ATF3P18847 181 aa11.54□□□□□ -0.56
LRRC28-219ENST00000560483 NWD1Q149M9 1564 aa11.54□□□□□ -0.56
LRRC28-219ENST00000560483 PDAP1Q13442 181 aaKnown RBP11.53□□□□□ -0.56
LRRC28-219ENST00000560483 ALKQ9UM73 1620 aa11.53□□□□□ -0.56
LRRC28-219ENST00000560483 IFT172Q9UG01 1749 aa11.52□□□□□ -0.56
LRRC28-219ENST00000560483 TMEM132EQ6IEE7 984 aa11.52□□□□□ -0.57
LRRC28-219ENST00000560483 SIN3AQ96ST3 1273 aa11.52□□□□□ -0.57
LRRC28-219ENST00000560483 PTPRUQ92729 1446 aa11.52□□□□□ -0.57
LRRC28-219ENST00000560483 XIRP1Q702N8 1843 aaKnown RBP11.51□□□□□ -0.57
LRRC28-219ENST00000560483 CFAP70Q5T0N1 1121 aa11.51□□□□□ -0.57
LRRC28-219ENST00000560483 DHX57Q6P158 1386 aaKnown RBP11.5□□□□□ -0.57
LRRC28-219ENST00000560483 CADPS2Q86UW7 1296 aa11.49□□□□□ -0.57
LRRC28-219ENST00000560483 C19orf44Q9H6X5 657 aa11.49□□□□□ -0.57
LRRC28-219ENST00000560483 PIK3C2GO75747 1445 aa11.49□□□□□ -0.57
LRRC28-219ENST00000560483 MYOM2P54296 1465 aa11.49□□□□□ -0.57
LRRC28-219ENST00000560483 SAFB2Q14151 953 aaKnown RBP eCLIP11.48□□□□□ -0.57
LRRC28-219ENST00000560483 POGKQ9P215 609 aa11.48□□□□□ -0.57
LRRC28-219ENST00000560483 BOLA1Q9Y3E2 137 aa11.48□□□□□ -0.57
LRRC28-219ENST00000560483 XRN1Q8IZH2 1706 aaKnown RBP11.47□□□□□ -0.57
LRRC28-219ENST00000560483 TONSLQ96HA7 1378 aa11.47□□□□□ -0.57
LRRC28-219ENST00000560483 HSPA1LP34931 641 aa11.47□□□□□ -0.57
LRRC28-219ENST00000560483 C14orf93Q9H972 538 aaKnown RBP11.47□□□□□ -0.57
LRRC28-219ENST00000560483 SLAIN2Q9P270 581 aa11.47□□□□□ -0.57
LRRC28-219ENST00000560483 CIZ1Q9ULV3 898 aaPredicted RBP11.47□□□□□ -0.57
LRRC28-219ENST00000560483 SETD1AO15047 1707 aaKnown RBP11.46□□□□□ -0.57
LRRC28-219ENST00000560483 LAMC1P11047 1609 aa11.46□□□□□ -0.57
LRRC28-219ENST00000560483 STAC3Q96MF2 364 aa11.46□□□□□ -0.57
LRRC28-219ENST00000560483 TRAK1Q9UPV9 953 aa11.46□□□□□ -0.57
LRRC28-219ENST00000560483 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.46□□□□□ -0.58
LRRC28-219ENST00000560483 YTHDC2Q9H6S0 1430 aaKnown RBP11.45□□□□□ -0.58
LRRC28-219ENST00000560483 ROBO2Q9HCK4 1378 aa11.45□□□□□ -0.58
LRRC28-219ENST00000560483 WAPLQ7Z5K2 1190 aa11.45□□□□□ -0.58
LRRC28-219ENST00000560483 PTCH1Q13635 1447 aa11.44□□□□□ -0.58
LRRC28-219ENST00000560483 NCOA3Q9Y6Q9 1424 aa11.44□□□□□ -0.58
LRRC28-219ENST00000560483 LRPPRCP42704 1394 aaKnown RBP11.44□□□□□ -0.58
LRRC28-219ENST00000560483 NUTM2FA1L443 756 aa11.44□□□□□ -0.58
LRRC28-219ENST00000560483 TMEM92Q6UXU6 159 aa11.44□□□□□ -0.58
LRRC28-219ENST00000560483 CCER1Q8TC90 406 aaPredicted RBP11.44□□□□□ -0.58
LRRC28-219ENST00000560483 L3MBTL2Q969R5 705 aa11.44□□□□□ -0.58
LRRC28-219ENST00000560483 ROBO1Q9Y6N7 1651 aa11.43□□□□□ -0.58
LRRC28-219ENST00000560483 SPOCK2Q92563 424 aa11.43□□□□□ -0.58
LRRC28-219ENST00000560483 PRAM1Q96QH2 718 aa11.43□□□□□ -0.58
LRRC28-219ENST00000560483 ADGRL3Q9HAR2 1447 aa11.43□□□□□ -0.58
LRRC28-219ENST00000560483 NALCNQ8IZF0 1738 aa11.42□□□□□ -0.58
LRRC28-219ENST00000560483 NRXN1Q9ULB1 1477 aa11.42□□□□□ -0.58
LRRC28-219ENST00000560483 EFCAB3Q8N7B9 438 aa11.41□□□□□ -0.58
LRRC28-219ENST00000560483 ABCC11Q96J66 1382 aa11.41□□□□□ -0.58
LRRC28-219ENST00000560483 PLEKHH1Q9ULM0 1364 aa11.41□□□□□ -0.58
LRRC28-219ENST00000560483 KNDC1Q76NI1 1749 aa11.4□□□□□ -0.58
LRRC28-219ENST00000560483 ASXL1Q8IXJ9 1541 aa11.4□□□□□ -0.58
LRRC28-219ENST00000560483 HIRIP3Q9BW71 556 aaPredicted RBP11.4□□□□□ -0.58
LRRC28-219ENST00000560483 MINK1Q8N4C8 1332 aaPredicted RBP11.39□□□□□ -0.59
LRRC28-219ENST00000560483 PHLPP1O60346 1717 aa11.39□□□□□ -0.59
LRRC28-219ENST00000560483 HOXB1P14653 301 aaPredicted RBP11.39□□□□□ -0.59
LRRC28-219ENST00000560483 DCCP43146 1447 aa11.39□□□□□ -0.59
LRRC28-219ENST00000560483 FAM135BQ49AJ0 1406 aa11.39□□□□□ -0.59
LRRC28-219ENST00000560483 ESCO1Q5FWF5 840 aa11.39□□□□□ -0.59
LRRC28-219ENST00000560483 PRAG1Q86YV5 1406 aa11.38□□□□□ -0.59
LRRC28-219ENST00000560483 NBPF1Q3BBV0 1214 aa11.38□□□□□ -0.59
LRRC28-219ENST00000560483 ROCK2O75116 1388 aaKnown RBP11.38□□□□□ -0.59
LRRC28-219ENST00000560483 TECPR2O15040 1411 aa11.37□□□□□ -0.59
LRRC28-219ENST00000560483 BRINP3Q76B58 766 aa11.37□□□□□ -0.59
LRRC28-219ENST00000560483 DISP3Q9P2K9 1392 aa11.37□□□□□ -0.59
LRRC28-219ENST00000560483 MST1RQ04912 1400 aa11.36□□□□□ -0.59
LRRC28-219ENST00000560483 ORAI2Q96SN7 254 aa11.36□□□□□ -0.59
LRRC28-219ENST00000560483 KIAA1210Q9ULL0 1709 aa11.35□□□□□ -0.59
LRRC28-219ENST00000560483 MEX3CQ5U5Q3 659 aaKnown RBP11.35□□□□□ -0.59
LRRC28-219ENST00000560483 DDX17Q92841 729 aaKnown RBP11.35□□□□□ -0.59
LRRC28-219ENST00000560483 SIRT1Q96EB6 747 aa11.35□□□□□ -0.59
LRRC28-219ENST00000560483 C1orf167Q5SNV9 1468 aa11.35□□□□□ -0.59
LRRC28-219ENST00000560483 ADGRB1O14514 1584 aa11.35□□□□□ -0.59
LRRC28-219ENST00000560483 RNF25Q96BH1 459 aaPredicted RBP11.34□□□□□ -0.59
LRRC28-219ENST00000560483 MS4A4AQ96JQ5 239 aa11.34□□□□□ -0.59
LRRC28-219ENST00000560483 CARD11Q9BXL7 1154 aa11.34□□□□□ -0.59
LRRC28-219ENST00000560483 DLC1Q96QB1 1528 aa11.34□□□□□ -0.59
LRRC28-219ENST00000560483 CDC42BPGQ6DT37 1551 aa11.33□□□□□ -0.6
LRRC28-219ENST00000560483 NUTM2BA6NNL0 878 aaPredicted RBP11.33□□□□□ -0.6
LRRC28-219ENST00000560483 NUTM2EB1AL46 878 aaPredicted RBP11.33□□□□□ -0.6
LRRC28-219ENST00000560483 XPCQ01831 940 aaPredicted RBP11.33□□□□□ -0.6
LRRC28-219ENST00000560483 NUTM2AQ8IVF1 878 aaPredicted RBP11.33□□□□□ -0.6
LRRC28-219ENST00000560483 ERBB3P21860 1342 aa11.33□□□□□ -0.6
LRRC28-219ENST00000560483 CENPJQ9HC77 1338 aaPredicted RBP11.33□□□□□ -0.6
LRRC28-219ENST00000560483 ARHGEF28Q8N1W1 1705 aaKnown RBP11.32□□□□□ -0.6
LRRC28-219ENST00000560483 EIF3AQ14152 1382 aaKnown RBP11.32□□□□□ -0.6
LRRC28-219ENST00000560483 G3V3G9 751 aa11.32□□□□□ -0.6
LRRC28-219ENST00000560483 SRPK2P78362 688 aaKnown RBP11.32□□□□□ -0.6
LRRC28-219ENST00000560483 VARS2Q5ST30 1063 aaKnown RBP11.32□□□□□ -0.6
LRRC28-219ENST00000560483 LMOD2Q6P5Q4 547 aa11.32□□□□□ -0.6
LRRC28-219ENST00000560483 MICALL2Q8IY33 904 aa11.32□□□□□ -0.6
LRRC28-219ENST00000560483 ZNF710Q8N1W2 664 aa11.32□□□□□ -0.6
LRRC28-219ENST00000560483 TRPM1Q7Z4N2 1603 aa11.31□□□□□ -0.6
LRRC28-219ENST00000560483 JCADQ9P266 1359 aa11.31□□□□□ -0.6
LRRC28-219ENST00000560483 FOXO3O43524 673 aa11.31□□□□□ -0.6
LRRC28-219ENST00000560483 NBPF8Q3BBV2 869 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms