RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 RUNDC1Q96C34 613 aa12.37□□□□□ -0.43
PDGFRB-207ENST00000520579 CARD14Q9BXL6 1004 aa12.37□□□□□ -0.43
PDGFRB-207ENST00000520579 ZSCAN20P17040 1043 aaPredicted RBP12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 TRMT2AQ8IZ69 625 aaKnown RBP12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 LARP6Q9BRS8 491 aaKnown RBP12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 MAGI2Q86UL8 1455 aa12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 C16orf71Q8IYS4 520 aaPredicted RBP12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 MBD5Q9P267 1494 aa12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 CDCA8Q53HL2 280 aa12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 CHD1LQ86WJ1 897 aa12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 USP25Q9UHP3 1055 aa12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 ZKSCAN5Q9Y2L8 839 aa12.36□□□□□ -0.43
PDGFRB-207ENST00000520579 KLHL40Q2TBA0 621 aa12.35□□□□□ -0.43
PDGFRB-207ENST00000520579 TAF3Q5VWG9 929 aa12.35□□□□□ -0.43
PDGFRB-207ENST00000520579 KIAA2012Q0VF49 1180 aa12.35□□□□□ -0.43
PDGFRB-207ENST00000520579 SASS6Q6UVJ0 657 aa12.35□□□□□ -0.43
PDGFRB-207ENST00000520579 SMC5Q8IY18 1101 aa12.35□□□□□ -0.43
PDGFRB-207ENST00000520579 PPP1R9BQ96SB3 815 aa12.35□□□□□ -0.43
PDGFRB-207ENST00000520579 GTPBP4Q9BZE4 634 aaKnown RBP12.35□□□□□ -0.43
PDGFRB-207ENST00000520579 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 IFT140Q96RY7 1462 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 KIF14Q15058 1648 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 TRIM6-TRIM34B2RNG4 842 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 NPHP1O15259 732 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 FBLN1P23142 703 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 TRIM34Q9BYJ4 488 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 TMEM63CQ9P1W3 806 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 SMARCA5O60264 1052 aaPredicted RBP12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 CFAP53Q96M91 514 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 DDX19BQ9UMR2 479 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 ATAD2Q6PL18 1390 aa12.34□□□□□ -0.43
PDGFRB-207ENST00000520579 AK9Q5TCS8 1911 aa12.33□□□□□ -0.43
PDGFRB-207ENST00000520579 U2AF2P26368 475 aaKnown RBP eCLIP12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 NOL7Q9UMY1 257 aaKnown RBP12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 PRAG1Q86YV5 1406 aa12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 ATP2B3Q16720 1220 aa12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 CCDC94Q9BW85 323 aaPredicted RBP12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 SLC52A1Q9NWF4 448 aa12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 PLEKHH2Q8IVE3 1493 aa12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 TSHZ3Q63HK5 1081 aa12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 TMEM132EQ6IEE7 984 aa12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 ATF7IPQ6VMQ6 1270 aa12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 GPT2Q8TD30 523 aa12.33□□□□□ -0.44
PDGFRB-207ENST00000520579 DNAJC2Q99543 621 aaKnown RBP12.32□□□□□ -0.44
PDGFRB-207ENST00000520579 ISY1Q9ULR0 285 aaKnown RBP12.32□□□□□ -0.44
PDGFRB-207ENST00000520579 ERICH4A6NGS2 130 aa12.32□□□□□ -0.44
PDGFRB-207ENST00000520579 FAM43BQ6ZT52 329 aaPredicted RBP12.32□□□□□ -0.44
PDGFRB-207ENST00000520579 OTUD7AQ8TE49 926 aaPredicted RBP12.32□□□□□ -0.44
PDGFRB-207ENST00000520579 ZNF592Q92610 1267 aa12.32□□□□□ -0.44
PDGFRB-207ENST00000520579 CCDC39Q9UFE4 941 aa12.32□□□□□ -0.44
PDGFRB-207ENST00000520579 C9orf84Q5VXU9 1444 aa12.31□□□□□ -0.44
PDGFRB-207ENST00000520579 KIF16BQ96L93 1317 aa12.31□□□□□ -0.44
PDGFRB-207ENST00000520579 DYNC1I1O14576 645 aa12.31□□□□□ -0.44
PDGFRB-207ENST00000520579 CCDC27Q2M243 656 aa12.31□□□□□ -0.44
PDGFRB-207ENST00000520579 LMBRD1Q9NUN5 540 aa12.31□□□□□ -0.44
PDGFRB-207ENST00000520579 CSPP1Q1MSJ5 1256 aa12.31□□□□□ -0.44
PDGFRB-207ENST00000520579 CIZ1Q9ULV3 898 aaPredicted RBP12.31□□□□□ -0.44
PDGFRB-207ENST00000520579 CTTNBP2Q8WZ74 1663 aa12.31□□□□□ -0.44
PDGFRB-207ENST00000520579 EP400NLQ6ZTU2 488 aa12.3□□□□□ -0.44
PDGFRB-207ENST00000520579 GGNBP2Q9H3C7 697 aa12.3□□□□□ -0.44
PDGFRB-207ENST00000520579 OS9Q13438 667 aaPredicted RBP12.3□□□□□ -0.44
PDGFRB-207ENST00000520579 UHRF1BP1Q6BDS2 1440 aa12.3□□□□□ -0.44
PDGFRB-207ENST00000520579 IRX5P78411 483 aaPredicted RBP12.3□□□□□ -0.44
PDGFRB-207ENST00000520579 COL17A1Q9UMD9 1497 aaPredicted RBP12.3□□□□□ -0.44
PDGFRB-207ENST00000520579 KIF2CQ99661 725 aa12.29□□□□□ -0.44
PDGFRB-207ENST00000520579 NEK4P51957 841 aa12.29□□□□□ -0.44
PDGFRB-207ENST00000520579 STK26Q9P289 416 aa12.29□□□□□ -0.44
PDGFRB-207ENST00000520579 PDCL2Q8N4E4 241 aa12.28□□□□□ -0.44
PDGFRB-207ENST00000520579 GPRASP1Q5JY77 1395 aa12.28□□□□□ -0.44
PDGFRB-207ENST00000520579 DRC7Q8IY82 874 aa12.28□□□□□ -0.44
PDGFRB-207ENST00000520579 UPF3BQ9BZI7 483 aaKnown RBP12.28□□□□□ -0.44
PDGFRB-207ENST00000520579 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.28□□□□□ -0.44
PDGFRB-207ENST00000520579 V9GYY5 206 aaPredicted RBP12.28□□□□□ -0.44
PDGFRB-207ENST00000520579 HMOX1P09601 288 aa12.27□□□□□ -0.44
PDGFRB-207ENST00000520579 NUCB2P80303 420 aa12.27□□□□□ -0.44
PDGFRB-207ENST00000520579 TSPY26PQ9H489 355 aa12.27□□□□□ -0.44
PDGFRB-207ENST00000520579 INSRP06213 1382 aa12.27□□□□□ -0.45
PDGFRB-207ENST00000520579 TNNT1P13805 278 aa12.27□□□□□ -0.45
PDGFRB-207ENST00000520579 HCLS1P14317 486 aaPredicted RBP12.27□□□□□ -0.45
PDGFRB-207ENST00000520579 RBM25P49756 843 aaKnown RBP12.27□□□□□ -0.45
PDGFRB-207ENST00000520579 ZNF622Q969S3 477 aaKnown RBP eCLIP12.27□□□□□ -0.45
PDGFRB-207ENST00000520579 SNX21Q969T3 373 aa12.27□□□□□ -0.45
PDGFRB-207ENST00000520579 GADD45BO75293 160 aaPredicted RBP12.27□□□□□ -0.45
PDGFRB-207ENST00000520579 CDC45O75419 566 aa12.26□□□□□ -0.45
PDGFRB-207ENST00000520579 KIF3AQ9Y496 699 aa12.26□□□□□ -0.45
PDGFRB-207ENST00000520579 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.26□□□□□ -0.45
PDGFRB-207ENST00000520579 NUCB1Q02818 461 aa12.26□□□□□ -0.45
PDGFRB-207ENST00000520579 NAA30Q147X3 362 aaPredicted RBP12.26□□□□□ -0.45
PDGFRB-207ENST00000520579 PLB1Q6P1J6 1458 aa12.26□□□□□ -0.45
PDGFRB-207ENST00000520579 LOC102724159A0A0B4J2E5 919 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 PRR29P0C7W0 189 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 NOLC1Q14978 699 aaKnown RBP eCLIP12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 PWP2Q15269 919 aaKnown RBP12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 POLR1AO95602 1720 aaPredicted RBP12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 BANK1Q8NDB2 785 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 CUL7Q14999 1698 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 PBRM1Q86U86 1689 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 IPO8O15397 1037 aaKnown RBP12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 FIBPO43427 364 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms