RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 ANKARQ7Z5J8 1434 aa17.34■□□□□ 0.37
RNF4-216ENST00000511859 PPARGC1BQ86YN6 1023 aaKnown RBP17.34■□□□□ 0.37
RNF4-216ENST00000511859 THSD7AQ9UPZ6 1657 aa17.34■□□□□ 0.37
RNF4-216ENST00000511859 GPRASP1Q5JY77 1395 aa17.33■□□□□ 0.37
RNF4-216ENST00000511859 ADGRB2O60241 1585 aa17.33■□□□□ 0.37
RNF4-216ENST00000511859 PRAM1Q96QH2 718 aa17.32■□□□□ 0.36
RNF4-216ENST00000511859 SPATA31A1Q5TZJ5 1347 aa17.32■□□□□ 0.36
RNF4-216ENST00000511859 SAFB2Q14151 953 aaKnown RBP eCLIP17.31■□□□□ 0.36
RNF4-216ENST00000511859 PRDM11Q9NQV5 511 aa17.31■□□□□ 0.36
RNF4-216ENST00000511859 POGKQ9P215 609 aa17.31■□□□□ 0.36
RNF4-216ENST00000511859 TRPM3Q9HCF6 1732 aaPredicted RBP17.31■□□□□ 0.36
RNF4-216ENST00000511859 SPON1Q9HCB6 807 aa17.3■□□□□ 0.36
RNF4-216ENST00000511859 ALS2Q96Q42 1657 aa17.3■□□□□ 0.36
RNF4-216ENST00000511859 PPP1R1BQ9UD71 204 aaPredicted RBP17.29■□□□□ 0.36
RNF4-216ENST00000511859 PDE3BQ13370 1112 aa17.28■□□□□ 0.36
RNF4-216ENST00000511859 CFAP70Q5T0N1 1121 aa17.28■□□□□ 0.36
RNF4-216ENST00000511859 ACIN1Q9UKV3 1341 aaKnown RBP17.28■□□□□ 0.36
RNF4-216ENST00000511859 KCNQ2O43526 872 aa17.28■□□□□ 0.36
RNF4-216ENST00000511859 EIF3AQ14152 1382 aaKnown RBP17.27■□□□□ 0.35
RNF4-216ENST00000511859 NINLQ9Y2I6 1382 aa17.27■□□□□ 0.35
RNF4-216ENST00000511859 UTRNP46939 3433 aa17.26■□□□□ 0.35
RNF4-216ENST00000511859 PAK3O75914 559 aaPredicted RBP17.26■□□□□ 0.35
RNF4-216ENST00000511859 BARGINQ6ZT62 677 aa17.26■□□□□ 0.35
RNF4-216ENST00000511859 NGDNQ8NEJ9 315 aaKnown RBP17.26■□□□□ 0.35
RNF4-216ENST00000511859 MPHOSPH9Q99550 1183 aa17.26■□□□□ 0.35
RNF4-216ENST00000511859 RREB1Q92766 1687 aa17.25■□□□□ 0.35
RNF4-216ENST00000511859 DLC1Q96QB1 1528 aa17.25■□□□□ 0.35
RNF4-216ENST00000511859 STRN4Q9NRL3 753 aa17.25■□□□□ 0.35
RNF4-216ENST00000511859 C11orf95C9JLR9 678 aaPredicted RBP17.24■□□□□ 0.35
RNF4-216ENST00000511859 EVA1CP58658 441 aa17.24■□□□□ 0.35
RNF4-216ENST00000511859 CRYBG1Q9Y4K1 1723 aa17.24■□□□□ 0.35
RNF4-216ENST00000511859 NUP188Q5SRE5 1749 aa17.23■□□□□ 0.35
RNF4-216ENST00000511859 KIAA0232Q92628 1395 aa17.22■□□□□ 0.35
RNF4-216ENST00000511859 CHRNA2Q15822 529 aa17.22■□□□□ 0.35
RNF4-216ENST00000511859 HIRIP3Q9BW71 556 aaPredicted RBP17.22■□□□□ 0.35
RNF4-216ENST00000511859 USP35Q9P2H5 1018 aa17.22■□□□□ 0.35
RNF4-216ENST00000511859 PRR36Q9H6K5 1346 aa17.21■□□□□ 0.35
RNF4-216ENST00000511859 WASLO00401 505 aaPredicted RBP17.21■□□□□ 0.35
RNF4-216ENST00000511859 ZC3H6P61129 1189 aaKnown RBP17.19■□□□□ 0.34
RNF4-216ENST00000511859 THRAP3Q9Y2W1 955 aaKnown RBP17.19■□□□□ 0.34
RNF4-216ENST00000511859 TULP4Q9NRJ4 1543 aa17.19■□□□□ 0.34
RNF4-216ENST00000511859 MINK1Q8N4C8 1332 aaPredicted RBP17.19■□□□□ 0.34
RNF4-216ENST00000511859 TCP11L2Q8N4U5 519 aa17.18■□□□□ 0.34
RNF4-216ENST00000511859 TRAK1Q9UPV9 953 aa17.18■□□□□ 0.34
RNF4-216ENST00000511859 PLSCR1O15162 318 aa17.16■□□□□ 0.34
RNF4-216ENST00000511859 SSH2Q76I76 1423 aa17.16■□□□□ 0.34
RNF4-216ENST00000511859 LARP1Q6PKG0 1096 aaKnown RBP17.15■□□□□ 0.34
RNF4-216ENST00000511859 ZNF784Q8NCA9 323 aaPredicted RBP17.15■□□□□ 0.34
RNF4-216ENST00000511859 ATP7BP35670 1465 aa17.14■□□□□ 0.33
RNF4-216ENST00000511859 PHRF1Q9P1Y6 1649 aaKnown RBP17.13■□□□□ 0.33
RNF4-216ENST00000511859 NUDT16Q96DE0 195 aaKnown RBP17.13■□□□□ 0.33
RNF4-216ENST00000511859 ADGRB1O14514 1584 aa17.12■□□□□ 0.33
RNF4-216ENST00000511859 CAMTA1Q9Y6Y1 1673 aa17.12■□□□□ 0.33
RNF4-216ENST00000511859 ITSN1Q15811 1721 aa17.11■□□□□ 0.33
RNF4-216ENST00000511859 CPDO75976 1380 aa17.11■□□□□ 0.33
RNF4-216ENST00000511859 NUTM2GQ5VZR2 741 aa17.11■□□□□ 0.33
RNF4-216ENST00000511859 RGPD3A6NKT7 1758 aaPredicted RBP17.1■□□□□ 0.33
RNF4-216ENST00000511859 RGPD4Q7Z3J3 1758 aa17.1■□□□□ 0.33
RNF4-216ENST00000511859 CHD4Q14839 1912 aa17.1■□□□□ 0.33
RNF4-216ENST00000511859 ABTB2Q8N961 1025 aa17.1■□□□□ 0.33
RNF4-216ENST00000511859 PARP4Q9UKK3 1724 aaKnown RBP17.09■□□□□ 0.33
RNF4-216ENST00000511859 OVOS2A0A0G2JMS6 1433 aa17.08■□□□□ 0.33
RNF4-216ENST00000511859 OVOS2A0A0J9YW53 1432 aa17.08■□□□□ 0.33
RNF4-216ENST00000511859 OVOS2Q6IE36 1432 aa17.08■□□□□ 0.33
RNF4-216ENST00000511859 SENP3-EIF4A1A0A087X0R7 540 aa17.08■□□□□ 0.32
RNF4-216ENST00000511859 STAC3Q96MF2 364 aa17.08■□□□□ 0.32
RNF4-216ENST00000511859 BCL11BQ9C0K0 894 aaPredicted RBP17.08■□□□□ 0.32
RNF4-216ENST00000511859 SBF2Q86WG5 1849 aa17.08■□□□□ 0.32
RNF4-216ENST00000511859 POLR3AO14802 1390 aaPredicted RBP17.08■□□□□ 0.32
RNF4-216ENST00000511859 C1QTNF8P60827 252 aa17.07■□□□□ 0.32
RNF4-216ENST00000511859 CCDC61Q9Y6R9 512 aa17.07■□□□□ 0.32
RNF4-216ENST00000511859 ACEP12821 1306 aa17.07■□□□□ 0.32
RNF4-216ENST00000511859 CASZ1Q86V15 1759 aa17.06■□□□□ 0.32
RNF4-216ENST00000511859 PTGER2P43116 358 aa17.06■□□□□ 0.32
RNF4-216ENST00000511859 NLRP13Q86W25 1043 aa17.06■□□□□ 0.32
RNF4-216ENST00000511859 CDK19Q9BWU1 502 aa17.06■□□□□ 0.32
RNF4-216ENST00000511859 ANO8Q9HCE9 1232 aaPredicted RBP17.06■□□□□ 0.32
RNF4-216ENST00000511859 LMO7Q8WWI1 1683 aa17.06■□□□□ 0.32
RNF4-216ENST00000511859 PLEKHG3A1L390 1219 aa17.05■□□□□ 0.32
RNF4-216ENST00000511859 ZBTB7AO95365 584 aa17.05■□□□□ 0.32
RNF4-216ENST00000511859 GCP02774 474 aa17.05■□□□□ 0.32
RNF4-216ENST00000511859 DDB1Q16531 1140 aa17.05■□□□□ 0.32
RNF4-216ENST00000511859 SYT17Q9BSW7 474 aa17.05■□□□□ 0.32
RNF4-216ENST00000511859 NRKQ7Z2Y5 1582 aa17.05■□□□□ 0.32
RNF4-216ENST00000511859 IFFO2Q5TF58 517 aa17.04■□□□□ 0.32
RNF4-216ENST00000511859 PROM2Q8N271 834 aa17.04■□□□□ 0.32
RNF4-216ENST00000511859 PDGFDQ9GZP0 370 aaPredicted RBP17.04■□□□□ 0.32
RNF4-216ENST00000511859 KDM2AQ9Y2K7 1162 aa17.04■□□□□ 0.32
RNF4-216ENST00000511859 USP19O94966 1318 aa17.04■□□□□ 0.32
RNF4-216ENST00000511859 CRB1P82279 1406 aa17.04■□□□□ 0.32
RNF4-216ENST00000511859 PEAK1Q9H792 1746 aa17.04■□□□□ 0.32
RNF4-216ENST00000511859 ATF5Q9Y2D1 282 aaPredicted RBP17.03■□□□□ 0.32
RNF4-216ENST00000511859 COL5A2P05997 1499 aaPredicted RBP17.02■□□□□ 0.32
RNF4-216ENST00000511859 DCAF11Q8TEB1 546 aa17.02■□□□□ 0.32
RNF4-216ENST00000511859 FHDC1Q9C0D6 1143 aaPredicted RBP17.02■□□□□ 0.32
RNF4-216ENST00000511859 STK32BQ9NY57 414 aa17.02■□□□□ 0.31
RNF4-216ENST00000511859 SLC15A2Q16348 729 aa17.01■□□□□ 0.31
RNF4-216ENST00000511859 CDCA7Q9BWT1 371 aaPredicted RBP17.01■□□□□ 0.31
RNF4-216ENST00000511859 MYOM1P52179 1685 aa17■□□□□ 0.31
RNF4-216ENST00000511859 BCL9O00512 1426 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms