RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-223	ENST00000508249	SBF2	Q86WG5	1849 aa		13.79	□□□□□ -0.2
UBE2D3-223	ENST00000508249	ANKRD30B	Q9BXX2	1392 aa		13.79	□□□□□ -0.2
UBE2D3-223	ENST00000508249	ADGRB1	O14514	1584 aa		13.79	□□□□□ -0.2
UBE2D3-223	ENST00000508249		A0A0G2JS52	829 aa		13.78	□□□□□ -0.2
UBE2D3-223	ENST00000508249	HAP1	P54257	671 aa	Predicted RBP	13.78	□□□□□ -0.2
UBE2D3-223	ENST00000508249	MYT1	Q01538	1121 aa		13.78	□□□□□ -0.2
UBE2D3-223	ENST00000508249	NRK	Q7Z2Y5	1582 aa		13.78	□□□□□ -0.2
UBE2D3-223	ENST00000508249	MYOM1	P52179	1685 aa		13.78	□□□□□ -0.2
UBE2D3-223	ENST00000508249	PARP4	Q9UKK3	1724 aa	Known RBP	13.78	□□□□□ -0.2
UBE2D3-223	ENST00000508249	SIRT1	Q96EB6	747 aa		13.77	□□□□□ -0.21
UBE2D3-223	ENST00000508249	TULP4	Q9NRJ4	1543 aa		13.77	□□□□□ -0.21
UBE2D3-223	ENST00000508249	ACIN1	Q9UKV3	1341 aa	Known RBP	13.77	□□□□□ -0.21
UBE2D3-223	ENST00000508249	SPATA31A1	Q5TZJ5	1347 aa		13.76	□□□□□ -0.21
UBE2D3-223	ENST00000508249	PRR36	Q9H6K5	1346 aa		13.76	□□□□□ -0.21
UBE2D3-223	ENST00000508249	PSME1	Q06323	249 aa		13.76	□□□□□ -0.21
UBE2D3-223	ENST00000508249	ITSN1	Q15811	1721 aa		13.76	□□□□□ -0.21
UBE2D3-223	ENST00000508249	TOPAZ1	Q8N9V7	1692 aa		13.75	□□□□□ -0.21
UBE2D3-223	ENST00000508249	NINL	Q9Y2I6	1382 aa		13.75	□□□□□ -0.21
UBE2D3-223	ENST00000508249	TRIM37	O94972	964 aa		13.75	□□□□□ -0.21
UBE2D3-223	ENST00000508249	WNK3	Q9BYP7	1800 aa		13.74	□□□□□ -0.21
UBE2D3-223	ENST00000508249	CEP350	Q5VT06	3117 aa		13.74	□□□□□ -0.21
UBE2D3-223	ENST00000508249	PMFBP1	Q8TBY8	1022 aa		13.74	□□□□□ -0.21
UBE2D3-223	ENST00000508249	LRRC37A3	O60309	1634 aa		13.73	□□□□□ -0.21
UBE2D3-223	ENST00000508249	LMOD2	Q6P5Q4	547 aa		13.73	□□□□□ -0.21
UBE2D3-223	ENST00000508249	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.73	□□□□□ -0.21
UBE2D3-223	ENST00000508249	C14orf93	Q9H972	538 aa	Known RBP	13.72	□□□□□ -0.21
UBE2D3-223	ENST00000508249	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.72	□□□□□ -0.21
UBE2D3-223	ENST00000508249	ATP7B	P35670	1465 aa		13.72	□□□□□ -0.21
UBE2D3-223	ENST00000508249	KIAA0232	Q92628	1395 aa		13.71	□□□□□ -0.21
UBE2D3-223	ENST00000508249	GOLGB1	Q14789	3259 aa	Known RBP	13.71	□□□□□ -0.21
UBE2D3-223	ENST00000508249	CHD4	Q14839	1912 aa		13.71	□□□□□ -0.21
UBE2D3-223	ENST00000508249	RGL3	Q3MIN7	710 aa		13.71	□□□□□ -0.21
UBE2D3-223	ENST00000508249	PRAM1	Q96QH2	718 aa		13.71	□□□□□ -0.21
UBE2D3-223	ENST00000508249	SSH2	Q76I76	1423 aa		13.71	□□□□□ -0.22
UBE2D3-223	ENST00000508249	FAM196A	Q6ZSG2	479 aa		13.7	□□□□□ -0.22
UBE2D3-223	ENST00000508249	APBA3	O96018	575 aa		13.69	□□□□□ -0.22
UBE2D3-223	ENST00000508249	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
UBE2D3-223	ENST00000508249	CFAP70	Q5T0N1	1121 aa		13.69	□□□□□ -0.22
UBE2D3-223	ENST00000508249	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.67	□□□□□ -0.22
UBE2D3-223	ENST00000508249	PRDM11	Q9NQV5	511 aa		13.67	□□□□□ -0.22
UBE2D3-223	ENST00000508249	DHX57	Q6P158	1386 aa	Known RBP	13.67	□□□□□ -0.22
UBE2D3-223	ENST00000508249	KCNQ2	O43526	872 aa		13.66	□□□□□ -0.22
UBE2D3-223	ENST00000508249	CHRNA2	Q15822	529 aa		13.66	□□□□□ -0.22
UBE2D3-223	ENST00000508249	BARGIN	Q6ZT62	677 aa		13.66	□□□□□ -0.22
UBE2D3-223	ENST00000508249	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.66	□□□□□ -0.22
UBE2D3-223	ENST00000508249	SPON1	Q9HCB6	807 aa		13.66	□□□□□ -0.22
UBE2D3-223	ENST00000508249	GPRASP1	Q5JY77	1395 aa		13.66	□□□□□ -0.22
UBE2D3-223	ENST00000508249	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.65	□□□□□ -0.22
UBE2D3-223	ENST00000508249	AKAP12	Q02952	1782 aa		13.64	□□□□□ -0.23
UBE2D3-223	ENST00000508249	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.64	□□□□□ -0.23
UBE2D3-223	ENST00000508249	COL5A2	P05997	1499 aa	Predicted RBP	13.63	□□□□□ -0.23
UBE2D3-223	ENST00000508249	STRN4	Q9NRL3	753 aa		13.63	□□□□□ -0.23
UBE2D3-223	ENST00000508249	PAPPA	Q13219	1627 aa		13.63	□□□□□ -0.23
UBE2D3-223	ENST00000508249	COL18A1	P39060	1754 aa		13.63	□□□□□ -0.23
UBE2D3-223	ENST00000508249	EIF3A	Q14152	1382 aa	Known RBP	13.62	□□□□□ -0.23
UBE2D3-223	ENST00000508249	PTGER2	P43116	358 aa		13.62	□□□□□ -0.23
UBE2D3-223	ENST00000508249	CPD	O75976	1380 aa		13.61	□□□□□ -0.23
UBE2D3-223	ENST00000508249	LARP1	Q6PKG0	1096 aa	Known RBP	13.61	□□□□□ -0.23
UBE2D3-223	ENST00000508249	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.61	□□□□□ -0.23
UBE2D3-223	ENST00000508249	POLR3A	O14802	1390 aa	Predicted RBP	13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	OVOS2	A0A0G2JMS6	1433 aa		13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	OVOS2	A0A0J9YW53	1432 aa		13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	NBPF8	Q3BBV2	869 aa		13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	NBPF14	Q5TI25	921 aa		13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	OVOS2	Q6IE36	1432 aa		13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	PTF1A	Q7RTS3	328 aa		13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	USP35	Q9P2H5	1018 aa		13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	USP19	O94966	1318 aa		13.6	□□□□□ -0.23
UBE2D3-223	ENST00000508249	COL24A1	Q17RW2	1714 aa		13.59	□□□□□ -0.23
UBE2D3-223	ENST00000508249	WASL	O00401	505 aa	Predicted RBP	13.59	□□□□□ -0.23
UBE2D3-223	ENST00000508249	ZC3H6	P61129	1189 aa	Known RBP	13.59	□□□□□ -0.23
UBE2D3-223	ENST00000508249	MPHOSPH9	Q99550	1183 aa		13.59	□□□□□ -0.23
UBE2D3-223	ENST00000508249	SHANK3	Q9BYB0	1731 aa		13.59	□□□□□ -0.23
UBE2D3-223	ENST00000508249	PAK3	O75914	559 aa	Predicted RBP	13.57	□□□□□ -0.24
UBE2D3-223	ENST00000508249	PDE3B	Q13370	1112 aa		13.57	□□□□□ -0.24
UBE2D3-223	ENST00000508249	PROM2	Q8N271	834 aa		13.57	□□□□□ -0.24
UBE2D3-223	ENST00000508249	TCP11L2	Q8N4U5	519 aa		13.57	□□□□□ -0.24
UBE2D3-223	ENST00000508249	SGIP1	Q9BQI5	828 aa		13.57	□□□□□ -0.24
UBE2D3-223	ENST00000508249	POGK	Q9P215	609 aa		13.57	□□□□□ -0.24
UBE2D3-223	ENST00000508249	RGPD5	Q99666	1765 aa		13.57	□□□□□ -0.24
UBE2D3-223	ENST00000508249	SLIT3	O75094	1523 aa		13.56	□□□□□ -0.24
UBE2D3-223	ENST00000508249	IFFO2	Q5TF58	517 aa		13.56	□□□□□ -0.24
UBE2D3-223	ENST00000508249	TRAK1	Q9UPV9	953 aa		13.56	□□□□□ -0.24
UBE2D3-223	ENST00000508249	NHS	Q6T4R5	1651 aa		13.56	□□□□□ -0.24
UBE2D3-223	ENST00000508249	BCL9	O00512	1426 aa		13.56	□□□□□ -0.24
UBE2D3-223	ENST00000508249	SENP3-EIF4A1	A0A087X0R7	540 aa		13.55	□□□□□ -0.24
UBE2D3-223	ENST00000508249	PLSCR1	O15162	318 aa		13.55	□□□□□ -0.24
UBE2D3-223	ENST00000508249	C1QTNF8	P60827	252 aa		13.55	□□□□□ -0.24
UBE2D3-223	ENST00000508249	NUTM2G	Q5VZR2	741 aa		13.55	□□□□□ -0.24
UBE2D3-223	ENST00000508249	NGDN	Q8NEJ9	315 aa	Known RBP	13.55	□□□□□ -0.24
UBE2D3-223	ENST00000508249	PIK3C2A	O00443	1686 aa		13.55	□□□□□ -0.24
UBE2D3-223	ENST00000508249	CRB1	P82279	1406 aa		13.55	□□□□□ -0.24
UBE2D3-223	ENST00000508249	ZBTB7A	O95365	584 aa		13.54	□□□□□ -0.24
UBE2D3-223	ENST00000508249	THRAP3	Q9Y2W1	955 aa	Known RBP	13.54	□□□□□ -0.24
UBE2D3-223	ENST00000508249	TUBGCP6	Q96RT7	1819 aa		13.54	□□□□□ -0.24
UBE2D3-223	ENST00000508249	QSER1	Q2KHR3	1735 aa		13.53	□□□□□ -0.24
UBE2D3-223	ENST00000508249	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.53	□□□□□ -0.24
UBE2D3-223	ENST00000508249	NUDT16	Q96DE0	195 aa	Known RBP	13.52	□□□□□ -0.25
UBE2D3-223	ENST00000508249	SYT17	Q9BSW7	474 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms