RNA–Protein interactions for RNA: ENST00000497382.5

VIT-208, Transcript of vitrin, human

TSL 1 (best) BASIC

Gene VIT, Length 2,650 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VIT-208	ENST00000497382	SETDB1	Q15047	1291 aa		12.02	□□□□□ -0.49
VIT-208	ENST00000497382	DDX46	Q7L014	1031 aa	Known RBP	12.02	□□□□□ -0.49
VIT-208	ENST00000497382	BORCS6	Q96GS4	357 aa		12.02	□□□□□ -0.49
VIT-208	ENST00000497382	GET4	Q7L5D6	327 aa	Predicted RBP	12.01	□□□□□ -0.49
VIT-208	ENST00000497382	ARHGAP5	Q13017	1502 aa		12.01	□□□□□ -0.49
VIT-208	ENST00000497382	CDK13	Q14004	1512 aa	Known RBP	12.01	□□□□□ -0.49
VIT-208	ENST00000497382	ANKRD23	Q86SG2	305 aa		12.01	□□□□□ -0.49
VIT-208	ENST00000497382	SUPT6H	Q7KZ85	1726 aa	Known RBP	12.01	□□□□□ -0.49
VIT-208	ENST00000497382	GORAB	Q5T7V8	394 aa		12	□□□□□ -0.49
VIT-208	ENST00000497382	MRVI1	Q9Y6F6	885 aa		12	□□□□□ -0.49
VIT-208	ENST00000497382	MYO3A	Q8NEV4	1616 aa		12	□□□□□ -0.49
VIT-208	ENST00000497382	ITSN2	Q9NZM3	1697 aa		11.99	□□□□□ -0.49
VIT-208	ENST00000497382	RHBDL3	P58872	404 aa		11.99	□□□□□ -0.49
VIT-208	ENST00000497382	TSPYL1	Q9H0U9	437 aa		11.99	□□□□□ -0.49
VIT-208	ENST00000497382	EFCC1	Q9HA90	598 aa		11.99	□□□□□ -0.49
VIT-208	ENST00000497382	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.98	□□□□□ -0.49
VIT-208	ENST00000497382	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.98	□□□□□ -0.49
VIT-208	ENST00000497382	CLIP1	P30622	1438 aa		11.98	□□□□□ -0.49
VIT-208	ENST00000497382	ABCC1	P33527	1531 aa		11.98	□□□□□ -0.49
VIT-208	ENST00000497382	TRO	Q12816	1431 aa	Predicted RBP	11.98	□□□□□ -0.49
VIT-208	ENST00000497382	RIOK3	O14730	519 aa	Known RBP	11.97	□□□□□ -0.49
VIT-208	ENST00000497382	TOM1	O60784	492 aa		11.97	□□□□□ -0.49
VIT-208	ENST00000497382	ZNF280D	Q6N043	979 aa		11.97	□□□□□ -0.49
VIT-208	ENST00000497382	KRBA2	Q6ZNG9	492 aa		11.97	□□□□□ -0.49
VIT-208	ENST00000497382	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.97	□□□□□ -0.49
VIT-208	ENST00000497382	MKL1	Q969V6	931 aa		11.97	□□□□□ -0.49
VIT-208	ENST00000497382	CGN	Q9P2M7	1197 aa	Known RBP	11.97	□□□□□ -0.49
VIT-208	ENST00000497382	KIDINS220	Q9ULH0	1771 aa		11.97	□□□□□ -0.49
VIT-208	ENST00000497382	CREBRF	Q8IUR6	639 aa		11.97	□□□□□ -0.49
VIT-208	ENST00000497382	ANKRD13A	Q8IZ07	590 aa		11.97	□□□□□ -0.49
VIT-208	ENST00000497382	PREX2	Q70Z35	1606 aa		11.97	□□□□□ -0.49
VIT-208	ENST00000497382	FMN1	Q68DA7	1419 aa		11.97	□□□□□ -0.49
VIT-208	ENST00000497382	PEX14	O75381	377 aa		11.96	□□□□□ -0.49
VIT-208	ENST00000497382	CDC42BPB	Q9Y5S2	1711 aa		11.96	□□□□□ -0.49
VIT-208	ENST00000497382	MSL3	Q8N5Y2	521 aa	Known RBP	11.96	□□□□□ -0.5
VIT-208	ENST00000497382	PTPRK	Q15262	1439 aa		11.96	□□□□□ -0.5
VIT-208	ENST00000497382	CCDC172	P0C7W6	258 aa		11.95	□□□□□ -0.5
VIT-208	ENST00000497382	AFAP1	Q8N556	730 aa		11.95	□□□□□ -0.5
VIT-208	ENST00000497382	PIK3R5	Q8WYR1	880 aa		11.95	□□□□□ -0.5
VIT-208	ENST00000497382	MYCBP	Q99417	103 aa	Predicted RBP	11.95	□□□□□ -0.5
VIT-208	ENST00000497382	CCDC181	Q5TID7	509 aa		11.95	□□□□□ -0.5
VIT-208	ENST00000497382	CCDC94	Q9BW85	323 aa	Predicted RBP	11.95	□□□□□ -0.5
VIT-208	ENST00000497382	TRAIP	Q9BWF2	469 aa		11.95	□□□□□ -0.5
VIT-208	ENST00000497382	ERBB3	P21860	1342 aa		11.95	□□□□□ -0.5
VIT-208	ENST00000497382	IPO8	O15397	1037 aa	Known RBP	11.94	□□□□□ -0.5
VIT-208	ENST00000497382	ANP32C	O43423	234 aa		11.94	□□□□□ -0.5
VIT-208	ENST00000497382	HSPA1L	P34931	641 aa		11.94	□□□□□ -0.5
VIT-208	ENST00000497382	SPRYD3	Q8NCJ5	442 aa		11.94	□□□□□ -0.5
VIT-208	ENST00000497382	POLR1A	O95602	1720 aa	Predicted RBP	11.94	□□□□□ -0.5
VIT-208	ENST00000497382	ZMYM3	Q14202	1370 aa		11.94	□□□□□ -0.5
VIT-208	ENST00000497382	PPFIA4	O75335	1185 aa		11.94	□□□□□ -0.5
VIT-208	ENST00000497382	NFKBIB	Q15653	356 aa		11.94	□□□□□ -0.5
VIT-208	ENST00000497382	NCKAP5L	Q9HCH0	1330 aa		11.94	□□□□□ -0.5
VIT-208	ENST00000497382	ESPN	B1AK53	854 aa		11.94	□□□□□ -0.5
VIT-208	ENST00000497382	CT47A1	Q5JQC4	288 aa	Predicted RBP	11.94	□□□□□ -0.5
VIT-208	ENST00000497382	ITFG2	Q969R8	447 aa		11.94	□□□□□ -0.5
VIT-208	ENST00000497382	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.93	□□□□□ -0.5
VIT-208	ENST00000497382	ZBTB9	Q96C00	473 aa		11.93	□□□□□ -0.5
VIT-208	ENST00000497382	PPP4R2	Q9NY27	417 aa		11.93	□□□□□ -0.5
VIT-208	ENST00000497382	PNMA2	Q9UL42	364 aa		11.93	□□□□□ -0.5
VIT-208	ENST00000497382	EPB41L2	O43491	1005 aa	Known RBP	11.93	□□□□□ -0.5
VIT-208	ENST00000497382	A2ML1	A8K2U0	1454 aa		11.92	□□□□□ -0.5
VIT-208	ENST00000497382	KIF4A	O95239	1232 aa		11.92	□□□□□ -0.5
VIT-208	ENST00000497382	NUB1	Q9Y5A7	615 aa		11.92	□□□□□ -0.5
VIT-208	ENST00000497382	CCDC97	Q96F63	343 aa	Predicted RBP	11.92	□□□□□ -0.5
VIT-208	ENST00000497382	SPATA32	Q96LK8	384 aa		11.92	□□□□□ -0.5
VIT-208	ENST00000497382	CALR	P27797	417 aa	Known RBP	11.91	□□□□□ -0.5
VIT-208	ENST00000497382	RIPK4	P57078	832 aa		11.91	□□□□□ -0.5
VIT-208	ENST00000497382	CLTC	Q00610	1675 aa	Known RBP	11.91	□□□□□ -0.5
VIT-208	ENST00000497382	PLXNC1	O60486	1568 aa		11.91	□□□□□ -0.5
VIT-208	ENST00000497382	FAM135A	Q9P2D6	1515 aa		11.91	□□□□□ -0.5
VIT-208	ENST00000497382	KIAA1211	Q6ZU35	1233 aa		11.91	□□□□□ -0.5
VIT-208	ENST00000497382	SIRT1	Q96EB6	747 aa		11.91	□□□□□ -0.5
VIT-208	ENST00000497382	CALR3	Q96L12	384 aa	Known RBP	11.91	□□□□□ -0.5
VIT-208	ENST00000497382	FAM13B	Q9NYF5	915 aa		11.91	□□□□□ -0.5
VIT-208	ENST00000497382	FEZ2	Q9UHY8	353 aa	Predicted RBP	11.91	□□□□□ -0.5
VIT-208	ENST00000497382	SHANK2	Q9UPX8	1470 aa		11.9	□□□□□ -0.5
VIT-208	ENST00000497382	ERCC3	P19447	782 aa		11.9	□□□□□ -0.5
VIT-208	ENST00000497382	KCNJ4	P48050	445 aa		11.9	□□□□□ -0.5
VIT-208	ENST00000497382	CSPP1	Q1MSJ5	1256 aa		11.9	□□□□□ -0.5
VIT-208	ENST00000497382	SMC4	Q9NTJ3	1288 aa		11.9	□□□□□ -0.5
VIT-208	ENST00000497382	SAMD9L	Q8IVG5	1584 aa		11.9	□□□□□ -0.51
VIT-208	ENST00000497382	MICAL1	Q8TDZ2	1067 aa		11.89	□□□□□ -0.51
VIT-208	ENST00000497382	NCAPG	Q9BPX3	1015 aa		11.89	□□□□□ -0.51
VIT-208	ENST00000497382	PAIP2	Q9BPZ3	127 aa	Known RBP	11.89	□□□□□ -0.51
VIT-208	ENST00000497382	DNMT1	P26358	1616 aa	Known RBP	11.89	□□□□□ -0.51
VIT-208	ENST00000497382	CXorf38	Q8TB03	319 aa		11.89	□□□□□ -0.51
VIT-208	ENST00000497382	TMC1	Q8TDI8	760 aa		11.89	□□□□□ -0.51
VIT-208	ENST00000497382	FOSB	P53539	338 aa		11.88	□□□□□ -0.51
VIT-208	ENST00000497382	LONRF3	Q496Y0	759 aa		11.88	□□□□□ -0.51
VIT-208	ENST00000497382	ZKSCAN2	Q63HK3	967 aa		11.88	□□□□□ -0.51
VIT-208	ENST00000497382	NEURL4	Q96JN8	1562 aa		11.88	□□□□□ -0.51
VIT-208	ENST00000497382	FAM210A	Q96ND0	272 aa		11.87	□□□□□ -0.51
VIT-208	ENST00000497382	SYNM	O15061	1565 aa		11.87	□□□□□ -0.51
VIT-208	ENST00000497382	MPHOSPH10	O00566	681 aa	Known RBP	11.87	□□□□□ -0.51
VIT-208	ENST00000497382	DEPDC5	O75140	1603 aa		11.87	□□□□□ -0.51
VIT-208	ENST00000497382	TRIM6-TRIM34	B2RNG4	842 aa		11.86	□□□□□ -0.51
VIT-208	ENST00000497382	ZNF853	P0CG23	659 aa		11.86	□□□□□ -0.51
VIT-208	ENST00000497382	PAX3	P23760	479 aa		11.86	□□□□□ -0.51
VIT-208	ENST00000497382	TRIM34	Q9BYJ4	488 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms