RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 AVPP01185 164 aa8.3□□□□□ -1.08
VPS41-214ENST00000490924 USP46P62068 366 aa8.3□□□□□ -1.08
VPS41-214ENST00000490924 PLCB2Q00722 1185 aa8.3□□□□□ -1.08
VPS41-214ENST00000490924 WNT7AO00755 349 aa8.29□□□□□ -1.08
VPS41-214ENST00000490924 KDM4AO75164 1064 aa8.29□□□□□ -1.08
VPS41-214ENST00000490924 WFS1O76024 890 aa8.29□□□□□ -1.08
VPS41-214ENST00000490924 NLRP7Q8WX94 980 aa8.29□□□□□ -1.08
VPS41-214ENST00000490924 USB1Q9BQ65 265 aaKnown RBP8.29□□□□□ -1.08
VPS41-214ENST00000490924 PHLDB1Q86UU1 1377 aa8.29□□□□□ -1.08
VPS41-214ENST00000490924 HFM1A2PYH4 1435 aa8.29□□□□□ -1.08
VPS41-214ENST00000490924 KIF21AQ7Z4S6 1674 aa8.28□□□□□ -1.08
VPS41-214ENST00000490924 PCF11O94913 1555 aaKnown RBP8.28□□□□□ -1.08
VPS41-214ENST00000490924 LAMC3Q9Y6N6 1575 aa8.28□□□□□ -1.08
VPS41-214ENST00000490924 POLA1P09884 1462 aaPredicted RBP8.28□□□□□ -1.08
VPS41-214ENST00000490924 CCER2I3L3R5 266 aa8.28□□□□□ -1.08
VPS41-214ENST00000490924 SMCPP49901 116 aaPredicted RBP8.28□□□□□ -1.08
VPS41-214ENST00000490924 HAP1P54257 671 aaPredicted RBP8.28□□□□□ -1.08
VPS41-214ENST00000490924 TRIM32Q13049 653 aa8.28□□□□□ -1.08
VPS41-214ENST00000490924 TOPBP1Q92547 1522 aa8.28□□□□□ -1.08
VPS41-214ENST00000490924 SAMD9Q5K651 1589 aa8.27□□□□□ -1.09
VPS41-214ENST00000490924 PRDM9Q9NQV7 894 aa8.27□□□□□ -1.09
VPS41-214ENST00000490924 GMPR2Q9P2T1 348 aaKnown RBP8.27□□□□□ -1.09
VPS41-214ENST00000490924 SNAPC4Q5SXM2 1469 aa8.26□□□□□ -1.09
VPS41-214ENST00000490924 INSM1Q01101 510 aaPredicted RBP8.26□□□□□ -1.09
VPS41-214ENST00000490924 RNF19BQ6ZMZ0 732 aa8.26□□□□□ -1.09
VPS41-214ENST00000490924 KIFC2Q96AC6 838 aa8.26□□□□□ -1.09
VPS41-214ENST00000490924 FGD6Q6ZV73 1430 aa8.26□□□□□ -1.09
VPS41-214ENST00000490924 UACAQ9BZF9 1416 aa8.26□□□□□ -1.09
VPS41-214ENST00000490924 WDR97A6NE52 1622 aa8.25□□□□□ -1.09
VPS41-214ENST00000490924 CTTNBP2Q8WZ74 1663 aa8.25□□□□□ -1.09
VPS41-214ENST00000490924 MAP2K5Q13163 448 aa8.25□□□□□ -1.09
VPS41-214ENST00000490924 NUTM1Q86Y26 1132 aa8.25□□□□□ -1.09
VPS41-214ENST00000490924 CCDC18Q5T9S5 1454 aa8.25□□□□□ -1.09
VPS41-214ENST00000490924 ARHGEF11O15085 1522 aa8.24□□□□□ -1.09
VPS41-214ENST00000490924 MMP16P51512 607 aa8.24□□□□□ -1.09
VPS41-214ENST00000490924 ABCA5Q8WWZ7 1642 aa8.24□□□□□ -1.09
VPS41-214ENST00000490924 EHBP1L1Q8N3D4 1523 aa8.24□□□□□ -1.09
VPS41-214ENST00000490924 GPR37O15354 613 aa8.23□□□□□ -1.09
VPS41-214ENST00000490924 CD46P15529 392 aa8.23□□□□□ -1.09
VPS41-214ENST00000490924 MRGPRX2Q96LB1 330 aa8.23□□□□□ -1.09
VPS41-214ENST00000490924 NESP48681 1621 aa8.22□□□□□ -1.09
VPS41-214ENST00000490924 MYOM3Q5VTT5 1437 aa8.22□□□□□ -1.09
VPS41-214ENST00000490924 GRIN2BQ13224 1484 aa8.22□□□□□ -1.09
VPS41-214ENST00000490924 TCOF1Q13428 1488 aaKnown RBP8.22□□□□□ -1.09
VPS41-214ENST00000490924 PPP1R15AO75807 674 aaPredicted RBP8.22□□□□□ -1.09
VPS41-214ENST00000490924 WNT7BP56706 349 aa8.22□□□□□ -1.09
VPS41-214ENST00000490924 MDM2Q00987 491 aaPredicted RBP8.22□□□□□ -1.09
VPS41-214ENST00000490924 SLC16A10Q8TF71 515 aa8.22□□□□□ -1.09
VPS41-214ENST00000490924 YTHDC1Q96MU7 727 aaKnown RBP8.22□□□□□ -1.09
VPS41-214ENST00000490924 ATP13A2Q9NQ11 1180 aa8.22□□□□□ -1.09
VPS41-214ENST00000490924 SUPT16HQ9Y5B9 1047 aaKnown RBP8.22□□□□□ -1.09
VPS41-214ENST00000490924 MINK1Q8N4C8 1332 aaPredicted RBP8.22□□□□□ -1.09
VPS41-214ENST00000490924 FAM181BA6NEQ2 426 aa8.21□□□□□ -1.1
VPS41-214ENST00000490924 CLCN1P35523 988 aa8.21□□□□□ -1.1
VPS41-214ENST00000490924 STK17AQ9UEE5 414 aa8.21□□□□□ -1.1
VPS41-214ENST00000490924 DACH1Q9UI36 760 aa8.21□□□□□ -1.1
VPS41-214ENST00000490924 MIA2Q96PC5 1412 aa8.2□□□□□ -1.1
VPS41-214ENST00000490924 PDS5BQ9NTI5 1447 aa8.2□□□□□ -1.1
VPS41-214ENST00000490924 DXOO77932 396 aaKnown RBP8.2□□□□□ -1.1
VPS41-214ENST00000490924 SMPD1P17405 629 aa8.2□□□□□ -1.1
VPS41-214ENST00000490924 RC3H1Q5TC82 1133 aaKnown RBP8.2□□□□□ -1.1
VPS41-214ENST00000490924 PHOX2BQ99453 314 aa8.2□□□□□ -1.1
VPS41-214ENST00000490924 WASF2Q9Y6W5 498 aa8.2□□□□□ -1.1
VPS41-214ENST00000490924 FHOD3Q2V2M9 1422 aa8.2□□□□□ -1.1
VPS41-214ENST00000490924 IRF6O14896 467 aa8.19□□□□□ -1.1
VPS41-214ENST00000490924 UGGT2Q9NYU1 1516 aa8.19□□□□□ -1.1
VPS41-214ENST00000490924 PTPN23Q9H3S7 1636 aa8.18□□□□□ -1.1
VPS41-214ENST00000490924 SUPT6HQ7KZ85 1726 aaKnown RBP8.18□□□□□ -1.1
VPS41-214ENST00000490924 ALDH1A1P00352 501 aa8.18□□□□□ -1.1
VPS41-214ENST00000490924 RANGAP1P46060 587 aaPredicted RBP8.18□□□□□ -1.1
VPS41-214ENST00000490924 ERICH6BQ5W0A0 696 aa8.18□□□□□ -1.1
VPS41-214ENST00000490924 EHBP1Q8NDI1 1231 aa8.18□□□□□ -1.1
VPS41-214ENST00000490924 GPCPD1Q9NPB8 672 aa8.18□□□□□ -1.1
VPS41-214ENST00000490924 MTUS2Q5JR59 1369 aa8.18□□□□□ -1.1
VPS41-214ENST00000490924 NAIPQ13075 1403 aa8.18□□□□□ -1.1
VPS41-214ENST00000490924 GAPVD1Q14C86 1478 aa8.18□□□□□ -1.1
VPS41-214ENST00000490924 J3QL48 77 aa8.17□□□□□ -1.1
VPS41-214ENST00000490924 JUNDP17535 347 aa8.17□□□□□ -1.1
VPS41-214ENST00000490924 TRIM47Q96LD4 638 aa8.17□□□□□ -1.1
VPS41-214ENST00000490924 NCOA2Q15596 1464 aa8.17□□□□□ -1.1
VPS41-214ENST00000490924 TERTO14746 1132 aaKnown RBP8.16□□□□□ -1.1
VPS41-214ENST00000490924 HOXA2O43364 376 aa8.16□□□□□ -1.1
VPS41-214ENST00000490924 ROCK1Q13464 1354 aa8.16□□□□□ -1.1
VPS41-214ENST00000490924 URB2Q14146 1524 aaKnown RBP8.16□□□□□ -1.1
VPS41-214ENST00000490924 TONSLQ96HA7 1378 aa8.16□□□□□ -1.1
VPS41-214ENST00000490924 RAD54L2Q9Y4B4 1467 aa8.16□□□□□ -1.1
VPS41-214ENST00000490924 HECW1Q76N89 1606 aa8.15□□□□□ -1.1
VPS41-214ENST00000490924 C6orf229H3BNL8 230 aa8.15□□□□□ -1.1
VPS41-214ENST00000490924 RETREG3Q86VR2 466 aa8.15□□□□□ -1.1
VPS41-214ENST00000490924 NUDT12Q9BQG2 462 aa8.15□□□□□ -1.1
VPS41-214ENST00000490924 GCC2Q8IWJ2 1684 aa8.14□□□□□ -1.11
VPS41-214ENST00000490924 FAM50AQ14320 339 aaKnown RBP8.14□□□□□ -1.11
VPS41-214ENST00000490924 HPS1Q92902 700 aa8.14□□□□□ -1.11
VPS41-214ENST00000490924 KDM5BQ9UGL1 1544 aa8.13□□□□□ -1.11
VPS41-214ENST00000490924 PLEKHG3A1L390 1219 aa8.13□□□□□ -1.11
VPS41-214ENST00000490924 ANP32CO43423 234 aa8.13□□□□□ -1.11
VPS41-214ENST00000490924 MS4A1P11836 297 aa8.13□□□□□ -1.11
VPS41-214ENST00000490924 TARBP1Q13395 1621 aaKnown RBP8.12□□□□□ -1.11
VPS41-214ENST00000490924 WIPF1O43516 503 aa8.12□□□□□ -1.11
VPS41-214ENST00000490924 FDX1P10109 184 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms