RNA–Protein interactions for RNA: ENST00000470258.5

NHLRC3-203, Transcript of NHL repeat containing 3, humanhuman

TSL 1 (best) BASIC

Gene NHLRC3, Length 3,298 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-203ENST00000470258 PKP1Q13835 747 aa11.78□□□□□ -0.52
NHLRC3-203ENST00000470258 TPRNQ4KMQ1 711 aa11.78□□□□□ -0.52
NHLRC3-203ENST00000470258 BBXQ8WY36 941 aaPredicted RBP11.78□□□□□ -0.52
NHLRC3-203ENST00000470258 KIF2CQ99661 725 aa11.78□□□□□ -0.52
NHLRC3-203ENST00000470258 CCDC39Q9UFE4 941 aa11.77□□□□□ -0.52
NHLRC3-203ENST00000470258 HDAC1Q13547 482 aaPredicted RBP11.77□□□□□ -0.53
NHLRC3-203ENST00000470258 TMEM57Q8N5G2 664 aa11.77□□□□□ -0.53
NHLRC3-203ENST00000470258 CARD14Q9BXL6 1004 aa11.77□□□□□ -0.53
NHLRC3-203ENST00000470258 AK9Q5TCS8 1911 aa11.77□□□□□ -0.53
NHLRC3-203ENST00000470258 CROCC2H7BZ55 1655 aa11.77□□□□□ -0.53
NHLRC3-203ENST00000470258 EXOSC9Q06265 439 aaKnown RBP11.77□□□□□ -0.53
NHLRC3-203ENST00000470258 PLA2R1Q13018 1463 aa11.76□□□□□ -0.53
NHLRC3-203ENST00000470258 U2AF1L5P0DN76 240 aaPredicted RBP11.76□□□□□ -0.53
NHLRC3-203ENST00000470258 U2AF1Q01081 240 aaKnown RBP eCLIP11.76□□□□□ -0.53
NHLRC3-203ENST00000470258 CHD1LQ86WJ1 897 aa11.76□□□□□ -0.53
NHLRC3-203ENST00000470258 CDC42BPAQ5VT25 1732 aa11.76□□□□□ -0.53
NHLRC3-203ENST00000470258 IGSF3O75054 1194 aa11.76□□□□□ -0.53
NHLRC3-203ENST00000470258 TBC1D9Q6ZT07 1266 aa11.76□□□□□ -0.53
NHLRC3-203ENST00000470258 NOB1Q9ULX3 412 aaKnown RBP11.76□□□□□ -0.53
NHLRC3-203ENST00000470258 CFAP74Q9C0B2 1584 aa11.76□□□□□ -0.53
NHLRC3-203ENST00000470258 ZSCAN20P17040 1043 aaPredicted RBP11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 WDR63Q8IWG1 891 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 SSH1Q8WYL5 1049 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 PDLIM2Q96JY6 352 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 PREX2Q70Z35 1606 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 KIAA2012Q0VF49 1180 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 C1orf115Q9H7X2 142 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 LMBRD1Q9NUN5 540 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 KIF16BQ96L93 1317 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 ARAP3Q8WWN8 1544 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 SPDYE4A6NLX3 237 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 PDE4CQ08493 712 aa11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 ZNF830Q96NB3 372 aaPredicted RBP11.75□□□□□ -0.53
NHLRC3-203ENST00000470258 IBTKQ9P2D0 1353 aaPredicted RBP11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 CDC42BPBQ9Y5S2 1711 aa11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 TRHP20396 242 aaPredicted RBP11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 NUCB1Q02818 461 aa11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 FAM69CQ0P6D2 419 aa11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 PPP4R3BQ5MIZ7 849 aa11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 ATF7IPQ6VMQ6 1270 aa11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 NUCB2P80303 420 aa11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 FOXD4L6Q3SYB3 417 aaPredicted RBP11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 FOXD4L3Q6VB84 417 aaPredicted RBP11.74□□□□□ -0.53
NHLRC3-203ENST00000470258 PLXNC1O60486 1568 aa11.73□□□□□ -0.53
NHLRC3-203ENST00000470258 C17orf53Q8N3J3 647 aaPredicted RBP11.73□□□□□ -0.53
NHLRC3-203ENST00000470258 GPT2Q8TD30 523 aa11.73□□□□□ -0.53
NHLRC3-203ENST00000470258 MTHFSP49914 203 aa11.73□□□□□ -0.53
NHLRC3-203ENST00000470258 CCDC141Q6ZP82 1450 aa11.72□□□□□ -0.53
NHLRC3-203ENST00000470258 BMP2KLQ5H9B9 411 aa11.72□□□□□ -0.53
NHLRC3-203ENST00000470258 UTP14CQ5TAP6 766 aaKnown RBP11.72□□□□□ -0.53
NHLRC3-203ENST00000470258 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.72□□□□□ -0.53
NHLRC3-203ENST00000470258 MCM5P33992 734 aa11.72□□□□□ -0.53
NHLRC3-203ENST00000470258 TMEM63CQ9P1W3 806 aa11.72□□□□□ -0.53
NHLRC3-203ENST00000470258 U2SURPO15042 1029 aaKnown RBP11.71□□□□□ -0.53
NHLRC3-203ENST00000470258 ZGPATQ8N5A5 531 aaKnown RBP11.71□□□□□ -0.53
NHLRC3-203ENST00000470258 CFAP53Q96M91 514 aa11.71□□□□□ -0.53
NHLRC3-203ENST00000470258 EIF2AK4Q9P2K8 1649 aaKnown RBP11.71□□□□□ -0.53
NHLRC3-203ENST00000470258 NSFL1CQ9UNZ2 370 aaKnown RBP11.71□□□□□ -0.53
NHLRC3-203ENST00000470258 PLCB2Q00722 1185 aa11.71□□□□□ -0.53
NHLRC3-203ENST00000470258 LRSAM1Q6UWE0 723 aa11.71□□□□□ -0.53
NHLRC3-203ENST00000470258 CD109Q6YHK3 1445 aa11.71□□□□□ -0.54
NHLRC3-203ENST00000470258 MYRIPQ8NFW9 859 aa11.71□□□□□ -0.54
NHLRC3-203ENST00000470258 SYNMO15061 1565 aa11.71□□□□□ -0.54
NHLRC3-203ENST00000470258 SHANK2Q9UPX8 1470 aa11.7□□□□□ -0.54
NHLRC3-203ENST00000470258 NPC1L1Q9UHC9 1359 aa11.7□□□□□ -0.54
NHLRC3-203ENST00000470258 ZBTB40Q9NUA8 1239 aa11.7□□□□□ -0.54
NHLRC3-203ENST00000470258 ATP2B3Q16720 1220 aa11.7□□□□□ -0.54
NHLRC3-203ENST00000470258 SCAPERQ9BY12 1400 aa11.7□□□□□ -0.54
NHLRC3-203ENST00000470258 POLR3AO14802 1390 aaPredicted RBP11.7□□□□□ -0.54
NHLRC3-203ENST00000470258 ZNF710Q8N1W2 664 aa11.69□□□□□ -0.54
NHLRC3-203ENST00000470258 SCAF11Q99590 1463 aaKnown RBP11.69□□□□□ -0.54
NHLRC3-203ENST00000470258 NEO1Q92859 1461 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 LAMC1P11047 1609 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 CDC45O75419 566 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 CFAP70Q5T0N1 1121 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 CLEC17AQ6ZS10 378 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 TTC12Q9H892 705 aaPredicted RBP11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 RICTORQ6R327 1708 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 RABEP1Q15276 862 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 KIF3AQ9Y496 699 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 FRMPD1Q5SYB0 1578 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 IPO8O15397 1037 aaKnown RBP11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 NOL8Q76FK4 1167 aaKnown RBP11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 SLC12A5Q9H2X9 1139 aa11.68□□□□□ -0.54
NHLRC3-203ENST00000470258 GTPBP4Q9BZE4 634 aaKnown RBP11.67□□□□□ -0.54
NHLRC3-203ENST00000470258 TSPY26PQ9H489 355 aa11.67□□□□□ -0.54
NHLRC3-203ENST00000470258 APBB1O00213 710 aa11.67□□□□□ -0.54
NHLRC3-203ENST00000470258 ZNF771Q7L3S4 317 aaPredicted RBP11.67□□□□□ -0.54
NHLRC3-203ENST00000470258 CGNQ9P2M7 1197 aaKnown RBP11.67□□□□□ -0.54
NHLRC3-203ENST00000470258 NSD3Q9BZ95 1437 aa11.67□□□□□ -0.54
NHLRC3-203ENST00000470258 VGLL3A8MV65 326 aa11.66□□□□□ -0.54
NHLRC3-203ENST00000470258 GTF2E1P29083 439 aaPredicted RBP11.66□□□□□ -0.54
NHLRC3-203ENST00000470258 HMGN5P82970 282 aaKnown RBP11.66□□□□□ -0.54
NHLRC3-203ENST00000470258 MAPK8IP2Q13387 824 aaPredicted RBP11.66□□□□□ -0.54
NHLRC3-203ENST00000470258 PDCL2Q8N4E4 241 aa11.66□□□□□ -0.54
NHLRC3-203ENST00000470258 PHF23Q9BUL5 403 aaPredicted RBP11.66□□□□□ -0.54
NHLRC3-203ENST00000470258 PLCH2O75038 1416 aa11.66□□□□□ -0.54
NHLRC3-203ENST00000470258 NOLC1Q14978 699 aaKnown RBP eCLIP11.66□□□□□ -0.54
NHLRC3-203ENST00000470258 USP25Q9UHP3 1055 aa11.66□□□□□ -0.54
NHLRC3-203ENST00000470258 CHMP4BQ9H444 224 aaKnown RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms