RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 ZNF287Q9HBT7 754 aa10.3□□□□□ -0.76
PTPN3-204ENST00000446349 GPS2Q13227 327 aa10.3□□□□□ -0.76
PTPN3-204ENST00000446349 SPRYD3Q8NCJ5 442 aa10.3□□□□□ -0.76
PTPN3-204ENST00000446349 THOC2Q8NI27 1593 aaKnown RBP10.3□□□□□ -0.76
PTPN3-204ENST00000446349 TXLNAP40222 546 aa10.3□□□□□ -0.76
PTPN3-204ENST00000446349 ZNF644Q9H582 1327 aaPredicted RBP10.3□□□□□ -0.76
PTPN3-204ENST00000446349 CREBRFQ8IUR6 639 aa10.29□□□□□ -0.76
PTPN3-204ENST00000446349 SRCIN1Q9C0H9 1055 aa10.29□□□□□ -0.76
PTPN3-204ENST00000446349 DNAI2Q9GZS0 605 aa10.29□□□□□ -0.76
PTPN3-204ENST00000446349 STRN4Q9NRL3 753 aa10.29□□□□□ -0.76
PTPN3-204ENST00000446349 KAT6BQ8WYB5 2073 aa10.29□□□□□ -0.76
PTPN3-204ENST00000446349 AMOTQ4VCS5 1084 aa10.29□□□□□ -0.76
PTPN3-204ENST00000446349 CCDC61Q9Y6R9 512 aa10.29□□□□□ -0.76
PTPN3-204ENST00000446349 PIP4K2AP48426 406 aaPredicted RBP10.29□□□□□ -0.76
PTPN3-204ENST00000446349 WASHC4Q2M389 1173 aa10.29□□□□□ -0.76
PTPN3-204ENST00000446349 NEUROD6Q96NK8 337 aa10.29□□□□□ -0.76
PTPN3-204ENST00000446349 NAT10Q9H0A0 1025 aaKnown RBP10.29□□□□□ -0.76
PTPN3-204ENST00000446349 GNAI2P04899 355 aa10.28□□□□□ -0.76
PTPN3-204ENST00000446349 MTHFSP49914 203 aa10.28□□□□□ -0.76
PTPN3-204ENST00000446349 CNNM1Q9NRU3 951 aa10.28□□□□□ -0.76
PTPN3-204ENST00000446349 IPO9Q96P70 1041 aaKnown RBP10.28□□□□□ -0.76
PTPN3-204ENST00000446349 PTPN23Q9H3S7 1636 aa10.28□□□□□ -0.76
PTPN3-204ENST00000446349 RBM42Q9BTD8 480 aaKnown RBP10.28□□□□□ -0.76
PTPN3-204ENST00000446349 HSP90AB3PQ58FF7 597 aa10.28□□□□□ -0.76
PTPN3-204ENST00000446349 SMC3Q9UQE7 1217 aa10.28□□□□□ -0.76
PTPN3-204ENST00000446349 BIVM-ERCC5R4GMW8 1640 aa10.28□□□□□ -0.76
PTPN3-204ENST00000446349 GGNBP2Q9H3C7 697 aa10.28□□□□□ -0.76
PTPN3-204ENST00000446349 IKQ13123 557 aaPredicted RBP10.27□□□□□ -0.76
PTPN3-204ENST00000446349 ANKRD1Q15327 319 aa10.27□□□□□ -0.76
PTPN3-204ENST00000446349 WDR63Q8IWG1 891 aa10.27□□□□□ -0.76
PTPN3-204ENST00000446349 GCC1Q96CN9 775 aa10.27□□□□□ -0.76
PTPN3-204ENST00000446349 HMOX1P09601 288 aa10.27□□□□□ -0.77
PTPN3-204ENST00000446349 MPHOSPH8Q99549 860 aa10.27□□□□□ -0.77
PTPN3-204ENST00000446349 TMOD2Q9NZR1 351 aa10.27□□□□□ -0.77
PTPN3-204ENST00000446349 BICRAQ9NZM4 1560 aa10.27□□□□□ -0.77
PTPN3-204ENST00000446349 ODF2Q5BJF6 829 aa10.27□□□□□ -0.77
PTPN3-204ENST00000446349 CCDC73Q6ZRK6 1079 aa10.27□□□□□ -0.77
PTPN3-204ENST00000446349 EPS15P42566 896 aa10.26□□□□□ -0.77
PTPN3-204ENST00000446349 CCDC57Q2TAC2 916 aa10.26□□□□□ -0.77
PTPN3-204ENST00000446349 SLKQ9H2G2 1235 aaPredicted RBP10.26□□□□□ -0.77
PTPN3-204ENST00000446349 PCMTD1Q96MG8 357 aaPredicted RBP10.26□□□□□ -0.77
PTPN3-204ENST00000446349 TRIM21P19474 475 aaKnown RBP10.26□□□□□ -0.77
PTPN3-204ENST00000446349 AIMP1Q12904 312 aaKnown RBP10.26□□□□□ -0.77
PTPN3-204ENST00000446349 ZNF530Q6P9A1 599 aaPredicted RBP10.26□□□□□ -0.77
PTPN3-204ENST00000446349 CFAP70Q5T0N1 1121 aa10.26□□□□□ -0.77
PTPN3-204ENST00000446349 CTTNBP2Q8WZ74 1663 aa10.26□□□□□ -0.77
PTPN3-204ENST00000446349 TMEM132EQ6IEE7 984 aa10.26□□□□□ -0.77
PTPN3-204ENST00000446349 MYO6Q9UM54 1294 aa10.26□□□□□ -0.77
PTPN3-204ENST00000446349 ARAP1Q96P48 1450 aa10.26□□□□□ -0.77
PTPN3-204ENST00000446349 CDR1P51861 262 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 TTC39AQ5SRH9 613 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 TEX13AQ9BXU3 409 aaPredicted RBP10.25□□□□□ -0.77
PTPN3-204ENST00000446349 HDGFL1Q5TGJ6 251 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 CDC45O75419 566 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 LETM1O95202 739 aaPredicted RBP10.25□□□□□ -0.77
PTPN3-204ENST00000446349 CADPS2Q86UW7 1296 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 SLF2Q8IX21 1173 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 JMYQ8N9B5 988 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 TXLNBQ8N3L3 684 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 CAMSAP2Q08AD1 1489 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 COG6Q9Y2V7 657 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 OLFM4Q6UX06 510 aa10.25□□□□□ -0.77
PTPN3-204ENST00000446349 CCDC173Q0VFZ6 552 aa10.24□□□□□ -0.77
PTPN3-204ENST00000446349 FCHSD2O94868 740 aa10.24□□□□□ -0.77
PTPN3-204ENST00000446349 PDE3AQ14432 1141 aa10.24□□□□□ -0.77
PTPN3-204ENST00000446349 CTNNA3Q9UI47 895 aa10.24□□□□□ -0.77
PTPN3-204ENST00000446349 IGHMBP2P38935 993 aaKnown RBP10.24□□□□□ -0.77
PTPN3-204ENST00000446349 CT47A1Q5JQC4 288 aaPredicted RBP10.24□□□□□ -0.77
PTPN3-204ENST00000446349 SASS6Q6UVJ0 657 aa10.24□□□□□ -0.77
PTPN3-204ENST00000446349 NSD2O96028 1365 aa10.24□□□□□ -0.77
PTPN3-204ENST00000446349 NECTIN2Q92692 538 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 FSD1Q9BTV5 496 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 BCL2L13Q9BXK5 485 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 NUTM2BA6NNL0 878 aaPredicted RBP10.23□□□□□ -0.77
PTPN3-204ENST00000446349 NUTM2EB1AL46 878 aaPredicted RBP10.23□□□□□ -0.77
PTPN3-204ENST00000446349 PRKAR2BP31323 418 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 NUTM2AQ8IVF1 878 aaPredicted RBP10.23□□□□□ -0.77
PTPN3-204ENST00000446349 CDK5RAP3Q96JB5 506 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 KIF21AQ7Z4S6 1674 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 FANCAO15360 1455 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 CDKL5O76039 1030 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 NOL8Q76FK4 1167 aaKnown RBP10.23□□□□□ -0.77
PTPN3-204ENST00000446349 DDX49Q9Y6V7 483 aaKnown RBP10.23□□□□□ -0.77
PTPN3-204ENST00000446349 ZPR1O75312 459 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 TWISTNBQ3B726 338 aaPredicted RBP10.23□□□□□ -0.77
PTPN3-204ENST00000446349 IL27Q8NEV9 243 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 BICD2Q8TD16 824 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 RAPGEF3O95398 923 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 TRIM22Q8IYM9 498 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 AKAP2Q9Y2D5 859 aa10.23□□□□□ -0.77
PTPN3-204ENST00000446349 ABCC11Q96J66 1382 aa10.22□□□□□ -0.77
PTPN3-204ENST00000446349 ZNF396Q96N95 335 aaPredicted RBP10.22□□□□□ -0.77
PTPN3-204ENST00000446349 ARHGEF11O15085 1522 aa10.22□□□□□ -0.77
PTPN3-204ENST00000446349 NUTM2GQ5VZR2 741 aa10.22□□□□□ -0.77
PTPN3-204ENST00000446349 CRBNQ96SW2 442 aa10.22□□□□□ -0.77
PTPN3-204ENST00000446349 LUC7LQ9NQ29 371 aaKnown RBP10.22□□□□□ -0.77
PTPN3-204ENST00000446349 MSH6P52701 1360 aa10.22□□□□□ -0.77
PTPN3-204ENST00000446349 SURF6O75683 361 aaKnown RBP10.21□□□□□ -0.77
PTPN3-204ENST00000446349 GNAT3A8MTJ3 354 aa10.21□□□□□ -0.77
PTPN3-204ENST00000446349 DESP17661 470 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms