RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 BRPF3Q9ULD4 1205 aa16.4■□□□□ 0.22
COL4A1-201ENST00000375820 AXDND1Q5T1B0 1012 aaPredicted RBP16.4■□□□□ 0.22
COL4A1-201ENST00000375820 MAGEC2Q9UBF1 373 aaPredicted RBP16.4■□□□□ 0.22
COL4A1-201ENST00000375820 KINO60870 393 aaKnown RBP16.39■□□□□ 0.21
COL4A1-201ENST00000375820 MTHFSP49914 203 aa16.39■□□□□ 0.21
COL4A1-201ENST00000375820 ABTB2Q8N961 1025 aa16.39■□□□□ 0.21
COL4A1-201ENST00000375820 TSR2Q969E8 191 aaKnown RBP16.39■□□□□ 0.21
COL4A1-201ENST00000375820 NEFHP12036 1026 aa16.39■□□□□ 0.21
COL4A1-201ENST00000375820 ESCO1Q5FWF5 840 aa16.39■□□□□ 0.21
COL4A1-201ENST00000375820 KIF6Q6ZMV9 814 aa16.39■□□□□ 0.21
COL4A1-201ENST00000375820 TSPY26PQ9H489 355 aa16.39■□□□□ 0.21
COL4A1-201ENST00000375820 ZNF644Q9H582 1327 aaPredicted RBP16.38■□□□□ 0.21
COL4A1-201ENST00000375820 NOM1Q5C9Z4 860 aaKnown RBP16.38■□□□□ 0.21
COL4A1-201ENST00000375820 SART3Q15020 963 aaKnown RBP16.38■□□□□ 0.21
COL4A1-201ENST00000375820 CLASRPQ8N2M8 674 aaKnown RBP16.38■□□□□ 0.21
COL4A1-201ENST00000375820 MYL6BP14649 208 aa16.38■□□□□ 0.21
COL4A1-201ENST00000375820 TSPYL1Q9H0U9 437 aa16.38■□□□□ 0.21
COL4A1-201ENST00000375820 SYCP1Q15431 976 aa16.37■□□□□ 0.21
COL4A1-201ENST00000375820 FANCIQ9NVI1 1328 aa16.37■□□□□ 0.21
COL4A1-201ENST00000375820 EXOSC9Q06265 439 aaKnown RBP16.37■□□□□ 0.21
COL4A1-201ENST00000375820 NUP133Q8WUM0 1156 aa16.37■□□□□ 0.21
COL4A1-201ENST00000375820 TANGO6Q9C0B7 1094 aa16.37■□□□□ 0.21
COL4A1-201ENST00000375820 KIF7Q2M1P5 1343 aa16.37■□□□□ 0.21
COL4A1-201ENST00000375820 NUTM2BA6NNL0 878 aaPredicted RBP16.37■□□□□ 0.21
COL4A1-201ENST00000375820 NUTM2EB1AL46 878 aaPredicted RBP16.37■□□□□ 0.21
COL4A1-201ENST00000375820 NUTM2AQ8IVF1 878 aaPredicted RBP16.37■□□□□ 0.21
COL4A1-201ENST00000375820 NOB1Q9ULX3 412 aaKnown RBP16.37■□□□□ 0.21
COL4A1-201ENST00000375820 PDZRN3Q9UPQ7 1066 aa16.37■□□□□ 0.21
COL4A1-201ENST00000375820 STK38Q15208 465 aa16.36■□□□□ 0.21
COL4A1-201ENST00000375820 SERPINC1P01008 464 aa16.36■□□□□ 0.21
COL4A1-201ENST00000375820 FAM193AP78312 1265 aa16.36■□□□□ 0.21
COL4A1-201ENST00000375820 CENPHQ9H3R5 247 aa16.36■□□□□ 0.21
COL4A1-201ENST00000375820 RBM5P52756 815 aaKnown RBP eCLIP16.36■□□□□ 0.21
COL4A1-201ENST00000375820 DDX54Q8TDD1 881 aaKnown RBP16.36■□□□□ 0.21
COL4A1-201ENST00000375820 PRKAR2BP31323 418 aa16.35■□□□□ 0.21
COL4A1-201ENST00000375820 SEPT11Q9NVA2 429 aaKnown RBP16.35■□□□□ 0.21
COL4A1-201ENST00000375820 CCDC30Q5VVM6 783 aa16.35■□□□□ 0.21
COL4A1-201ENST00000375820 FILIP1LQ4L180 1135 aa16.34■□□□□ 0.21
COL4A1-201ENST00000375820 CCDC191Q8NCU4 936 aa16.34■□□□□ 0.21
COL4A1-201ENST00000375820 PDCL3Q9H2J4 239 aa16.34■□□□□ 0.21
COL4A1-201ENST00000375820 CCDC85AQ96PX6 553 aaPredicted RBP16.34■□□□□ 0.21
COL4A1-201ENST00000375820 FAM69CQ0P6D2 419 aa16.34■□□□□ 0.21
COL4A1-201ENST00000375820 WWC2Q6AWC2 1192 aa16.34■□□□□ 0.21
COL4A1-201ENST00000375820 TCP11L2Q8N4U5 519 aa16.34■□□□□ 0.21
COL4A1-201ENST00000375820 SMARCE1Q969G3 411 aa16.34■□□□□ 0.21
COL4A1-201ENST00000375820 BCAR3O75815 825 aa16.33■□□□□ 0.21
COL4A1-201ENST00000375820 MRE11P49959 708 aa16.33■□□□□ 0.21
COL4A1-201ENST00000375820 HSP90AB3PQ58FF7 597 aa16.33■□□□□ 0.21
COL4A1-201ENST00000375820 WIZO95785 1651 aa16.33■□□□□ 0.2
COL4A1-201ENST00000375820 DCTN1Q14203 1278 aa16.32■□□□□ 0.2
COL4A1-201ENST00000375820 TXLNAP40222 546 aa16.32■□□□□ 0.2
COL4A1-201ENST00000375820 SLC4A2P04920 1241 aa16.32■□□□□ 0.2
COL4A1-201ENST00000375820 FKBP4Q02790 459 aaKnown RBP eCLIP16.32■□□□□ 0.2
COL4A1-201ENST00000375820 TWISTNBQ3B726 338 aaPredicted RBP16.32■□□□□ 0.2
COL4A1-201ENST00000375820 DEF6Q9H4E7 631 aa16.32■□□□□ 0.2
COL4A1-201ENST00000375820 PRDM2Q13029 1718 aa16.31■□□□□ 0.2
COL4A1-201ENST00000375820 SSBP05455 408 aaKnown RBP eCLIP16.31■□□□□ 0.2
COL4A1-201ENST00000375820 ME1P48163 572 aa16.31■□□□□ 0.2
COL4A1-201ENST00000375820 ENOX2Q16206 610 aaKnown RBP16.31■□□□□ 0.2
COL4A1-201ENST00000375820 PTPRGP23470 1445 aa16.31■□□□□ 0.2
COL4A1-201ENST00000375820 TAX1BP1Q86VP1 789 aa16.31■□□□□ 0.2
COL4A1-201ENST00000375820 RDXP35241 583 aaKnown RBP16.31■□□□□ 0.2
COL4A1-201ENST00000375820 CCDC158Q5M9N0 1113 aa16.31■□□□□ 0.2
COL4A1-201ENST00000375820 CT47B1P0C2W7 299 aaPredicted RBP16.31■□□□□ 0.2
COL4A1-201ENST00000375820 MAPK8IP2Q13387 824 aaPredicted RBP16.31■□□□□ 0.2
COL4A1-201ENST00000375820 RUSC2Q8N2Y8 1516 aa16.31■□□□□ 0.2
COL4A1-201ENST00000375820 IL27Q8NEV9 243 aa16.3■□□□□ 0.2
COL4A1-201ENST00000375820 SLC3A2P08195 630 aaKnown RBP16.3■□□□□ 0.2
COL4A1-201ENST00000375820 BICDL1Q6ZP65 573 aa16.3■□□□□ 0.2
COL4A1-201ENST00000375820 CCDC7Q96M83 1385 aa16.3■□□□□ 0.2
COL4A1-201ENST00000375820 ERCC4Q92889 916 aaPredicted RBP16.29■□□□□ 0.2
COL4A1-201ENST00000375820 MYO6Q9UM54 1294 aa16.29■□□□□ 0.2
COL4A1-201ENST00000375820 CCDC69A6NI79 296 aa16.29■□□□□ 0.2
COL4A1-201ENST00000375820 ZNF396Q96N95 335 aaPredicted RBP16.29■□□□□ 0.2
COL4A1-201ENST00000375820 MATR3P43243 847 aaKnown RBP eCLIP16.28■□□□□ 0.2
COL4A1-201ENST00000375820 TNMDQ9H2S6 317 aa16.28■□□□□ 0.2
COL4A1-201ENST00000375820 GNAI2P04899 355 aa16.28■□□□□ 0.2
COL4A1-201ENST00000375820 CCDC181Q5TID7 509 aa16.28■□□□□ 0.2
COL4A1-201ENST00000375820 SEPT7Q16181 437 aaKnown RBP16.28■□□□□ 0.2
COL4A1-201ENST00000375820 TXNDC2Q86VQ3 553 aa16.28■□□□□ 0.2
COL4A1-201ENST00000375820 GNAI3P08754 354 aa16.28■□□□□ 0.2
COL4A1-201ENST00000375820 CHMP4BP1P59074 171 aa16.27■□□□□ 0.2
COL4A1-201ENST00000375820 CNTLNQ9NXG0 1405 aa16.27■□□□□ 0.2
COL4A1-201ENST00000375820 CFAP70Q5T0N1 1121 aa16.27■□□□□ 0.2
COL4A1-201ENST00000375820 CABP4P57796 275 aa16.27■□□□□ 0.19
COL4A1-201ENST00000375820 MIA2Q96PC5 1412 aa16.27■□□□□ 0.19
COL4A1-201ENST00000375820 XPCQ01831 940 aaPredicted RBP16.27■□□□□ 0.19
COL4A1-201ENST00000375820 LEKR1Q6ZMV7 388 aa16.27■□□□□ 0.19
COL4A1-201ENST00000375820 ZSCAN29Q8IWY8 852 aaPredicted RBP16.27■□□□□ 0.19
COL4A1-201ENST00000375820 CWC15Q9P013 229 aaKnown RBP16.27■□□□□ 0.19
COL4A1-201ENST00000375820 SMARCA2P51531 1590 aa16.26■□□□□ 0.19
COL4A1-201ENST00000375820 HDGFL1Q5TGJ6 251 aa16.26■□□□□ 0.19
COL4A1-201ENST00000375820 PPFIBP1Q86W92 1011 aa16.26■□□□□ 0.19
COL4A1-201ENST00000375820 LETM1O95202 739 aaPredicted RBP16.26■□□□□ 0.19
COL4A1-201ENST00000375820 SULT6B1Q6IMI4 303 aa16.26■□□□□ 0.19
COL4A1-201ENST00000375820 ZNHIT6Q9NWK9 470 aaKnown RBP16.26■□□□□ 0.19
COL4A1-201ENST00000375820 CYP46A1Q9Y6A2 500 aa16.26■□□□□ 0.19
COL4A1-201ENST00000375820 CWC27Q6UX04 472 aaKnown RBP16.26■□□□□ 0.19
COL4A1-201ENST00000375820 PLEKHO1Q53GL0 409 aaPredicted RBP16.25■□□□□ 0.19
COL4A1-201ENST00000375820 PRAM1Q96QH2 718 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms