RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 RWDD1Q9H446 243 aaPredicted RBP13.2□□□□□ -0.3
SKA1-201ENST00000285116 PREX1Q8TCU6 1659 aa13.2□□□□□ -0.3
SKA1-201ENST00000285116 MTHFSP49914 203 aa13.19□□□□□ -0.3
SKA1-201ENST00000285116 TBC1D32Q96NH3 1257 aa13.19□□□□□ -0.3
SKA1-201ENST00000285116 PTPRMP28827 1452 aa13.19□□□□□ -0.3
SKA1-201ENST00000285116 VGFO15240 615 aaPredicted RBP13.19□□□□□ -0.3
SKA1-201ENST00000285116 TRAK1Q9UPV9 953 aa13.19□□□□□ -0.3
SKA1-201ENST00000285116 PCDHB15Q9Y5E8 787 aa13.19□□□□□ -0.3
SKA1-201ENST00000285116 MYO5BQ9ULV0 1848 aa13.18□□□□□ -0.3
SKA1-201ENST00000285116 MVPQ14764 893 aaKnown RBP13.18□□□□□ -0.3
SKA1-201ENST00000285116 ANTXR1Q9H6X2 564 aa13.18□□□□□ -0.3
SKA1-201ENST00000285116 RLBP1P12271 317 aa13.18□□□□□ -0.3
SKA1-201ENST00000285116 HDAC1Q13547 482 aaPredicted RBP13.17□□□□□ -0.3
SKA1-201ENST00000285116 CD163L1Q9NR16 1453 aa13.17□□□□□ -0.3
SKA1-201ENST00000285116 ATAD2Q6PL18 1390 aa13.16□□□□□ -0.3
SKA1-201ENST00000285116 PNPLA6Q8IY17 1366 aa13.16□□□□□ -0.3
SKA1-201ENST00000285116 PLEKHF1Q96S99 279 aa13.16□□□□□ -0.3
SKA1-201ENST00000285116 PKNOX2Q96KN3 472 aa13.16□□□□□ -0.3
SKA1-201ENST00000285116 SEC24BO95487 1268 aa13.16□□□□□ -0.3
SKA1-201ENST00000285116 ZKSCAN2Q63HK3 967 aa13.16□□□□□ -0.3
SKA1-201ENST00000285116 UPF2Q9HAU5 1272 aaKnown RBP13.16□□□□□ -0.3
SKA1-201ENST00000285116 PDZRN3Q9UPQ7 1066 aa13.16□□□□□ -0.3
SKA1-201ENST00000285116 PPIP5K1Q6PFW1 1433 aa13.16□□□□□ -0.3
SKA1-201ENST00000285116 REREQ9P2R6 1566 aa13.15□□□□□ -0.3
SKA1-201ENST00000285116 DLC1Q96QB1 1528 aa13.15□□□□□ -0.31
SKA1-201ENST00000285116 A0A1W2PP64 1363 aa13.14□□□□□ -0.31
SKA1-201ENST00000285116 PLEKHG5O94827 1062 aa13.14□□□□□ -0.31
SKA1-201ENST00000285116 SLKQ9H2G2 1235 aaPredicted RBP13.14□□□□□ -0.31
SKA1-201ENST00000285116 CLCN1P35523 988 aa13.13□□□□□ -0.31
SKA1-201ENST00000285116 RBM33Q96EV2 1170 aaKnown RBP13.13□□□□□ -0.31
SKA1-201ENST00000285116 PNNQ9H307 717 aaKnown RBP13.13□□□□□ -0.31
SKA1-201ENST00000285116 GOLGA6L3A6NEY3 463 aa13.13□□□□□ -0.31
SKA1-201ENST00000285116 BRPF1P55201 1214 aaPredicted RBP13.13□□□□□ -0.31
SKA1-201ENST00000285116 DZIP1LQ8IYY4 767 aaKnown RBP13.13□□□□□ -0.31
SKA1-201ENST00000285116 TMEM132EQ6IEE7 984 aa13.12□□□□□ -0.31
SKA1-201ENST00000285116 SLC52A1Q9NWF4 448 aa13.12□□□□□ -0.31
SKA1-201ENST00000285116 RRP7AQ9Y3A4 280 aaKnown RBP13.12□□□□□ -0.31
SKA1-201ENST00000285116 FSD2A1L4K1 749 aa13.12□□□□□ -0.31
SKA1-201ENST00000285116 XRCC6P12956 609 aaKnown RBP eCLIP13.12□□□□□ -0.31
SKA1-201ENST00000285116 ZNF428Q96B54 188 aa13.12□□□□□ -0.31
SKA1-201ENST00000285116 STAG3Q9UJ98 1225 aa13.12□□□□□ -0.31
SKA1-201ENST00000285116 DDX19BQ9UMR2 479 aa13.12□□□□□ -0.31
SKA1-201ENST00000285116 SETD1AO15047 1707 aaKnown RBP13.11□□□□□ -0.31
SKA1-201ENST00000285116 ARHGEF40Q8TER5 1519 aa13.11□□□□□ -0.31
SKA1-201ENST00000285116 NAP1L5Q96NT1 182 aaPredicted RBP13.11□□□□□ -0.31
SKA1-201ENST00000285116 STK26Q9P289 416 aa13.11□□□□□ -0.31
SKA1-201ENST00000285116 SMC5Q8IY18 1101 aa13.11□□□□□ -0.31
SKA1-201ENST00000285116 TRIM35Q9UPQ4 493 aa13.11□□□□□ -0.31
SKA1-201ENST00000285116 RRP9O43818 475 aaKnown RBP13.1□□□□□ -0.31
SKA1-201ENST00000285116 TMPOP42166 694 aaKnown RBP13.1□□□□□ -0.31
SKA1-201ENST00000285116 ESF1Q9H501 851 aaKnown RBP13.1□□□□□ -0.31
SKA1-201ENST00000285116 ATP7BP35670 1465 aa13.1□□□□□ -0.31
SKA1-201ENST00000285116 NCOA3Q9Y6Q9 1424 aa13.1□□□□□ -0.31
SKA1-201ENST00000285116 ALKQ9UM73 1620 aa13.1□□□□□ -0.31
SKA1-201ENST00000285116 U2AF1L5P0DN76 240 aaPredicted RBP13.1□□□□□ -0.31
SKA1-201ENST00000285116 U2AF1Q01081 240 aaKnown RBP eCLIP13.1□□□□□ -0.31
SKA1-201ENST00000285116 ALDH1L2Q3SY69 923 aa13.09□□□□□ -0.31
SKA1-201ENST00000285116 TNNQ9UQP3 1299 aa13.09□□□□□ -0.31
SKA1-201ENST00000285116 KIF16BQ96L93 1317 aa13.09□□□□□ -0.31
SKA1-201ENST00000285116 LRRC7Q96NW7 1537 aa13.09□□□□□ -0.31
SKA1-201ENST00000285116 HSP90AA1P07900 732 aaKnown RBP13.09□□□□□ -0.31
SKA1-201ENST00000285116 TBC1D2Q9BYX2 928 aa13.09□□□□□ -0.31
SKA1-201ENST00000285116 YTHDC2Q9H6S0 1430 aaKnown RBP13.09□□□□□ -0.31
SKA1-201ENST00000285116 PIK3R4Q99570 1358 aa13.09□□□□□ -0.31
SKA1-201ENST00000285116 NEUROD2Q15784 382 aa13.09□□□□□ -0.31
SKA1-201ENST00000285116 HSP90AA2PQ14568 343 aaPredicted RBP13.08□□□□□ -0.32
SKA1-201ENST00000285116 ATF7IPQ6VMQ6 1270 aa13.08□□□□□ -0.32
SKA1-201ENST00000285116 TERF2IPQ9NYB0 399 aa13.08□□□□□ -0.32
SKA1-201ENST00000285116 FAM135BQ49AJ0 1406 aa13.08□□□□□ -0.32
SKA1-201ENST00000285116 TRIM27P14373 513 aa13.08□□□□□ -0.32
SKA1-201ENST00000285116 TNNT2P45379 298 aaPredicted RBP13.08□□□□□ -0.32
SKA1-201ENST00000285116 FTSJ3Q8IY81 847 aaKnown RBP13.08□□□□□ -0.32
SKA1-201ENST00000285116 NUTM2FA1L443 756 aa13.07□□□□□ -0.32
SKA1-201ENST00000285116 MCM4P33991 863 aa13.07□□□□□ -0.32
SKA1-201ENST00000285116 ZBTB40Q9NUA8 1239 aa13.06□□□□□ -0.32
SKA1-201ENST00000285116 PTCH1Q13635 1447 aa13.06□□□□□ -0.32
SKA1-201ENST00000285116 IPO8O15397 1037 aaKnown RBP13.06□□□□□ -0.32
SKA1-201ENST00000285116 MRE11P49959 708 aa13.06□□□□□ -0.32
SKA1-201ENST00000285116 EXOSC9Q06265 439 aaKnown RBP13.06□□□□□ -0.32
SKA1-201ENST00000285116 SSH1Q8WYL5 1049 aa13.06□□□□□ -0.32
SKA1-201ENST00000285116 CABP2Q9NPB3 220 aa13.06□□□□□ -0.32
SKA1-201ENST00000285116 SMC4Q9NTJ3 1288 aa13.06□□□□□ -0.32
SKA1-201ENST00000285116 FYB1O15117 783 aa13.05□□□□□ -0.32
SKA1-201ENST00000285116 VSIG10Q8N0Z9 540 aa13.05□□□□□ -0.32
SKA1-201ENST00000285116 KNDC1Q76NI1 1749 aa13.05□□□□□ -0.32
SKA1-201ENST00000285116 FCHSD2O94868 740 aa13.04□□□□□ -0.32
SKA1-201ENST00000285116 RBM25P49756 843 aaKnown RBP13.04□□□□□ -0.32
SKA1-201ENST00000285116 BCL2L13Q9BXK5 485 aa13.04□□□□□ -0.32
SKA1-201ENST00000285116 MON2Q7Z3U7 1717 aa13.04□□□□□ -0.32
SKA1-201ENST00000285116 IDI1Q13907 227 aa13.04□□□□□ -0.32
SKA1-201ENST00000285116 PANK2Q9BZ23 570 aa13.04□□□□□ -0.32
SKA1-201ENST00000285116 C22orf23Q9BZE7 217 aa13.04□□□□□ -0.32
SKA1-201ENST00000285116 ZMYND15Q9H091 742 aa13.04□□□□□ -0.32
SKA1-201ENST00000285116 CHMP4BQ9H444 224 aaKnown RBP13.04□□□□□ -0.32
SKA1-201ENST00000285116 ISY1Q9ULR0 285 aaKnown RBP13.04□□□□□ -0.32
SKA1-201ENST00000285116 AGLP35573 1532 aa13.04□□□□□ -0.32
SKA1-201ENST00000285116 MAP2P11137 1827 aaKnown RBP13.03□□□□□ -0.32
SKA1-201ENST00000285116 NUCB1Q02818 461 aa13.03□□□□□ -0.32
SKA1-201ENST00000285116 ARHGAP45Q92619 1136 aa13.03□□□□□ -0.32
SKA1-201ENST00000285116 SNX21Q969T3 373 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms