RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 CDK11AQ9UQ88 783 aaPredicted RBP8.48□□□□□ -1.05
TOPBP1-201ENST00000260810 TAF1LQ8IZX4 1826 aa8.48□□□□□ -1.05
TOPBP1-201ENST00000260810 TJP1Q07157 1748 aa8.48□□□□□ -1.05
TOPBP1-201ENST00000260810 CCER1Q8TC90 406 aaPredicted RBP8.48□□□□□ -1.05
TOPBP1-201ENST00000260810 TIMELESSQ9UNS1 1208 aa8.47□□□□□ -1.05
TOPBP1-201ENST00000260810 LRP6O75581 1613 aa8.47□□□□□ -1.05
TOPBP1-201ENST00000260810 CICQ96RK0 1608 aaPredicted RBP8.47□□□□□ -1.05
TOPBP1-201ENST00000260810 NUP188Q5SRE5 1749 aa8.47□□□□□ -1.05
TOPBP1-201ENST00000260810 ZFHX3Q15911 3703 aa8.46□□□□□ -1.05
TOPBP1-201ENST00000260810 TNRQ92752 1358 aa8.46□□□□□ -1.06
TOPBP1-201ENST00000260810 RGL3Q3MIN7 710 aa8.45□□□□□ -1.06
TOPBP1-201ENST00000260810 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.45□□□□□ -1.061e-7■■■■□ 21
TOPBP1-201ENST00000260810 COL5A3P25940 1745 aaPredicted RBP8.45□□□□□ -1.06
TOPBP1-201ENST00000260810 COL24A1Q17RW2 1714 aa8.45□□□□□ -1.06
TOPBP1-201ENST00000260810 ZNF316A6NFI3 1004 aaPredicted RBP8.45□□□□□ -1.06
TOPBP1-201ENST00000260810 PRKRIP1Q9H875 184 aaPredicted RBP8.44□□□□□ -1.06
TOPBP1-201ENST00000260810 TAF1P21675 1872 aa8.44□□□□□ -1.06
TOPBP1-201ENST00000260810 PLEKHF1Q96S99 279 aa8.44□□□□□ -1.06
TOPBP1-201ENST00000260810 RNF123Q5XPI4 1314 aa8.44□□□□□ -1.06
TOPBP1-201ENST00000260810 SCAF1Q9H7N4 1312 aaKnown RBP8.44□□□□□ -1.06
TOPBP1-201ENST00000260810 INSRP06213 1382 aa8.44□□□□□ -1.06
TOPBP1-201ENST00000260810 PNISRQ8TF01 805 aaKnown RBP8.43□□□□□ -1.06
TOPBP1-201ENST00000260810 SLC12A5Q9H2X9 1139 aa8.43□□□□□ -1.06
TOPBP1-201ENST00000260810 KCNA6P17658 529 aa8.43□□□□□ -1.06
TOPBP1-201ENST00000260810 RGS12O14924 1447 aa8.43□□□□□ -1.06
TOPBP1-201ENST00000260810 MYO5AQ9Y4I1 1855 aaKnown RBP8.42□□□□□ -1.06
TOPBP1-201ENST00000260810 TRMT2AQ8IZ69 625 aaKnown RBP8.42□□□□□ -1.06
TOPBP1-201ENST00000260810 SENP3Q9H4L4 574 aaPredicted RBP8.42□□□□□ -1.06
TOPBP1-201ENST00000260810 USP31Q70CQ4 1352 aa8.42□□□□□ -1.06
TOPBP1-201ENST00000260810 KIAA1551Q9HCM1 1747 aa8.42□□□□□ -1.06
TOPBP1-201ENST00000260810 DDX17Q92841 729 aaKnown RBP8.41□□□□□ -1.06
TOPBP1-201ENST00000260810 PIK3R4Q99570 1358 aa8.41□□□□□ -1.06
TOPBP1-201ENST00000260810 TSPY4P0CV99 314 aa8.41□□□□□ -1.06
TOPBP1-201ENST00000260810 TSPY10P0CW01 314 aa8.41□□□□□ -1.06
TOPBP1-201ENST00000260810 WASHC2CQ9Y4E1 1318 aa8.41□□□□□ -1.06
TOPBP1-201ENST00000260810 THSD7AQ9UPZ6 1657 aa8.41□□□□□ -1.06
TOPBP1-201ENST00000260810 HSPA2P54652 639 aa8.41□□□□□ -1.06
TOPBP1-201ENST00000260810 CFAP47Q6ZTR5 3102 aa8.4□□□□□ -1.07
TOPBP1-201ENST00000260810 SENP3-EIF4A1A0A087X0R7 540 aa8.39□□□□□ -1.07
TOPBP1-201ENST00000260810 TRANK1O15050 2925 aa8.39□□□□□ -1.07
TOPBP1-201ENST00000260810 NPC1L1Q9UHC9 1359 aa8.39□□□□□ -1.07
TOPBP1-201ENST00000260810 USP6P35125 1406 aa8.38□□□□□ -1.07
TOPBP1-201ENST00000260810 FYB1O15117 783 aa8.38□□□□□ -1.07
TOPBP1-201ENST00000260810 AXIN2Q9Y2T1 843 aa8.38□□□□□ -1.07
TOPBP1-201ENST00000260810 LAMA5O15230 3695 aa8.38□□□□□ -1.07
TOPBP1-201ENST00000260810 LY75O60449 1722 aa8.38□□□□□ -1.07
TOPBP1-201ENST00000260810 DDX10Q13206 875 aaKnown RBP8.38□□□□□ -1.07
TOPBP1-201ENST00000260810 TNS1Q9HBL0 1735 aaKnown RBP8.37□□□□□ -1.07
TOPBP1-201ENST00000260810 C1orf167Q5SNV9 1468 aa8.37□□□□□ -1.07
TOPBP1-201ENST00000260810 FREM2Q5SZK8 3169 aa8.37□□□□□ -1.07
TOPBP1-201ENST00000260810 DDX60Q8IY21 1712 aaKnown RBP8.36□□□□□ -1.07
TOPBP1-201ENST00000260810 SLC26A8Q96RN1 970 aa8.36□□□□□ -1.07
TOPBP1-201ENST00000260810 KDM2AQ9Y2K7 1162 aa8.36□□□□□ -1.07
TOPBP1-201ENST00000260810 MSH6P52701 1360 aa8.36□□□□□ -1.07
TOPBP1-201ENST00000260810 ZNF335Q9H4Z2 1342 aaPredicted RBP8.36□□□□□ -1.07
TOPBP1-201ENST00000260810 C4AP0C0L4 1744 aa8.35□□□□□ -1.07
TOPBP1-201ENST00000260810 C4BP0C0L5 1744 aa8.35□□□□□ -1.07
TOPBP1-201ENST00000260810 LAMB2P55268 1798 aa8.35□□□□□ -1.07
TOPBP1-201ENST00000260810 ROCK2O75116 1388 aaKnown RBP8.35□□□□□ -1.07
TOPBP1-201ENST00000260810 ADGRL3Q9HAR2 1447 aa8.35□□□□□ -1.07
TOPBP1-201ENST00000260810 MLECQ14165 292 aa8.34□□□□□ -1.07
TOPBP1-201ENST00000260810 SLC52A1Q9NWF4 448 aa8.34□□□□□ -1.08
TOPBP1-201ENST00000260810 NPHP4O75161 1426 aaPredicted RBP8.33□□□□□ -1.08
TOPBP1-201ENST00000260810 PPP6R1Q9UPN7 881 aa8.32□□□□□ -1.08
TOPBP1-201ENST00000260810 ANKRD36CQ5JPF3 1778 aa8.32□□□□□ -1.08
TOPBP1-201ENST00000260810 CELSR3Q9NYQ7 3312 aa8.32□□□□□ -1.08
TOPBP1-201ENST00000260810 PRAM1Q96QH2 718 aa8.32□□□□□ -1.08
TOPBP1-201ENST00000260810 KDRP35968 1356 aa8.31□□□□□ -1.08
TOPBP1-201ENST00000260810 LTBP1Q14766 1721 aa8.31□□□□□ -1.08
TOPBP1-201ENST00000260810 CABP2Q9NPB3 220 aa8.31□□□□□ -1.08
TOPBP1-201ENST00000260810 TNNQ9UQP3 1299 aa8.31□□□□□ -1.08
TOPBP1-201ENST00000260810 ANKRD36BQ8N2N9 1353 aa8.31□□□□□ -1.08
TOPBP1-201ENST00000260810 DOT1LQ8TEK3 1739 aa8.31□□□□□ -1.08
TOPBP1-201ENST00000260810 TRAK1Q9UPV9 953 aa8.31□□□□□ -1.08
TOPBP1-201ENST00000260810 ZNF831Q5JPB2 1677 aa8.31□□□□□ -1.08
TOPBP1-201ENST00000260810 TONSLQ96HA7 1378 aa8.31□□□□□ -1.08
TOPBP1-201ENST00000260810 LRP10Q7Z4F1 713 aa8.3□□□□□ -1.08
TOPBP1-201ENST00000260810 ORAI2Q96SN7 254 aa8.3□□□□□ -1.08
TOPBP1-201ENST00000260810 KCPQ6ZWJ8 1503 aa8.3□□□□□ -1.08
TOPBP1-201ENST00000260810 NSD3Q9BZ95 1437 aa8.3□□□□□ -1.08
TOPBP1-201ENST00000260810 NWD2Q9ULI1 1742 aa8.3□□□□□ -1.08
TOPBP1-201ENST00000260810 MRC1P22897 1456 aa8.3□□□□□ -1.08
TOPBP1-201ENST00000260810 DIEXFQ68CQ4 756 aaKnown RBP8.3□□□□□ -1.08
TOPBP1-201ENST00000260810 TRIM52Q96A61 297 aa8.3□□□□□ -1.08
TOPBP1-201ENST00000260810 TXNDC2Q86VQ3 553 aa8.3□□□□□ -1.08
TOPBP1-201ENST00000260810 MEGF6O75095 1541 aa8.29□□□□□ -1.08
TOPBP1-201ENST00000260810 SKAP1Q86WV1 359 aa8.29□□□□□ -1.08
TOPBP1-201ENST00000260810 PANK3Q9H999 370 aa8.29□□□□□ -1.08
TOPBP1-201ENST00000260810 TRIM35Q9UPQ4 493 aa8.29□□□□□ -1.08
TOPBP1-201ENST00000260810 AMIGO3Q86WK7 504 aa8.29□□□□□ -1.08
TOPBP1-201ENST00000260810 DISP2A7MBM2 1401 aa8.29□□□□□ -1.08
TOPBP1-201ENST00000260810 PHACTR3Q96KR7 559 aa8.29□□□□□ -1.08
TOPBP1-201ENST00000260810 SIRT1Q96EB6 747 aa8.28□□□□□ -1.08
TOPBP1-201ENST00000260810 CRB1P82279 1406 aa8.28□□□□□ -1.08
TOPBP1-201ENST00000260810 CDCA7LQ96GN5 454 aa8.28□□□□□ -1.08
TOPBP1-201ENST00000260810 LAMB4A4D0S4 1761 aa8.28□□□□□ -1.08
TOPBP1-201ENST00000260810 COL14A1Q05707 1796 aaKnown RBP8.28□□□□□ -1.08
TOPBP1-201ENST00000260810 PPIP5K1Q6PFW1 1433 aa8.28□□□□□ -1.08
TOPBP1-201ENST00000260810 TBX22Q9Y458 520 aa8.28□□□□□ -1.08
TOPBP1-201ENST00000260810 CDK12Q9NYV4 1490 aaPredicted RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms