RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 TMEM59LQ9UK28 342 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 SH3BP1Q9Y3L3 701 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 JRKLQ9Y4A0 524 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 FAM208BQ5VWN6 2430 aa13.15□□□□□ -0.3
UPF1-208ENST00000600012 TCRBV21S2A2A0A5A6 115 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 MYO1FO00160 1098 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 URI1O94763 535 aaPredicted RBP13.14□□□□□ -0.31
UPF1-208ENST00000600012 COMTP21964 271 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 PSMA2P25787 234 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 SLC5A3P53794 718 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 DAOAP59103 153 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 FOXC1Q12948 553 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 TRIM61Q5EBN2 209 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 EMC10Q5UCC4 262 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 NUDT18Q6ZVK8 323 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 SLC26A9Q7LBE3 791 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 TRMT11Q7Z4G4 463 aaKnown RBP13.14□□□□□ -0.31
UPF1-208ENST00000600012 ZDHHC17Q8IUH5 632 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 SYT12Q8IV01 421 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 ETFBKMTQ8IXQ9 262 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 PHTF2Q8N3S3 785 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 SCAMP5Q8TAC9 235 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 KCNV2Q8TDN2 545 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 HMGB4Q8WW32 186 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 RXFP2Q8WXD0 754 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 PSMB7Q99436 277 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 NUSAP1Q9BXS6 441 aaKnown RBP13.14□□□□□ -0.31
UPF1-208ENST00000600012 UBXN6Q9BZV1 441 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 PNPLA8Q9NP80 782 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 COMMD8Q9NX08 183 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 IL37Q9NZH6 218 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 IP6K2Q9UHH9 426 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 AMFRQ9UKV5 643 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 ALG6Q9Y672 507 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 CHD6Q8TD26 2715 aa13.14□□□□□ -0.31
UPF1-208ENST00000600012 CACNA1EQ15878 2313 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 FAM92AA1XBS5 289 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 TBC1D3BA6NDS4 549 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 C2CD4BA6NLJ0 364 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 SPOPO43791 374 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 ADAM23O75077 832 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 TULP3O75386 442 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 FBXO21O94952 628 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 ZDHHC11BP0C7U3 371 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 GPD1P21695 349 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 HOXD12P35452 270 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 SCNN1AP37088 669 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 MARCKSL1P49006 195 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 MAP7D1Q3KQU3 841 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 UAP1L1Q3KQV9 507 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 PAPD7Q5XG87 772 aaKnown RBP13.13□□□□□ -0.31
UPF1-208ENST00000600012 LYSMD4Q5XG99 296 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 UNQ6494/PRO21346Q6UXR6 183 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 ARMCX6Q7L4S7 300 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 BHLHA9Q7RTU4 235 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 BBS7Q8IWZ6 715 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 TMEFF1Q8IYR6 380 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 PGBD3Q8N328 593 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 ZNF513Q8N8E2 541 aaPredicted RBP13.13□□□□□ -0.31
UPF1-208ENST00000600012 TERB1Q8NA31 727 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 FAM149B1Q96BN6 582 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 NACA2Q9H009 215 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 CCSER2Q9H7U1 834 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 ZDHHC4Q9NPG8 344 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 CNGB3Q9NQW8 809 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 GMIPQ9P107 970 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 DEC1Q9P2X7 70 aa13.13□□□□□ -0.31
UPF1-208ENST00000600012 ADAMTS9Q9P2N4 1935 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 YJEFN3A6XGL0 299 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 E7ENQ6 273 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 DDX3YO15523 660 aaKnown RBP13.12□□□□□ -0.31
UPF1-208ENST00000600012 HSF2BPO75031 334 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 SRGAP2O75044 1071 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 DAB1O75553 588 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 ZBED1O96006 694 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 CXCR5P32302 372 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 MAN1A1P33908 653 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 GJC1P36383 396 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 PTGER3P43115 390 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 SSR1P43307 286 aaKnown RBP13.12□□□□□ -0.31
UPF1-208ENST00000600012 TAS2R40P59535 323 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 RPS6KA1Q15418 735 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 C15orf59Q2T9L4 293 aaPredicted RBP13.12□□□□□ -0.31
UPF1-208ENST00000600012 ANO4Q32M45 955 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 EFHC1Q5JVL4 640 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 PEAR1Q5VY43 1037 aaPredicted RBP13.12□□□□□ -0.31
UPF1-208ENST00000600012 SLC23A3Q6PIS1 610 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 FRMD1Q8N878 549 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 NAT16Q8N8M0 369 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 KRT35Q92764 455 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 CFAP57Q96MR6 1250 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 FBXO44Q9H4M3 255 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 SPHK2Q9NRA0 654 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 MBD1Q9UIS9 605 aaPredicted RBP13.12□□□□□ -0.31
UPF1-208ENST00000600012 SNX12Q9UMY4 172 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 WASF3Q9UPY6 502 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 CFAP47Q6ZTR5 3102 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 IGF2RP11717 2491 aa13.12□□□□□ -0.31
UPF1-208ENST00000600012 C1QTNF9BB2RNN3 333 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms