RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 DMGDHQ9UI17 866 aaKnown RBP17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 TRANK1O15050 2925 aa17.61■□□□□ 0.41
CCDC28B-202ENST00000421922 IGLV3-10A0A075B6K4 115 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 WASH4PA8MWX3 477 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 DYNC1I1O14576 645 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 NDC80O14777 642 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 LINC01565O15544 149 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 KCNN4O15554 427 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 GLP2RO95838 553 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 KLKB1P03952 638 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 STIP1P31948 543 aaKnown RBP17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 MAPKAPK2P49137 400 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 VPS41P49754 854 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 HLTFQ14527 1009 aaKnown RBP eCLIP17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 GET4Q7L5D6 327 aaPredicted RBP17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 GPR149Q86SP6 731 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 CCDC117Q8IWD4 279 aaPredicted RBP17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 MICALL1Q8N3F8 863 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 ATPAF2Q8N5M1 289 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 CCDC33Q8N5R6 958 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 HJURPQ8NCD3 748 aaPredicted RBP17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 IFT81Q8WYA0 676 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 IGSF8Q969P0 613 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 CELF6Q96J87 481 aaKnown RBP17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 OLFM3Q96PB7 478 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 GAS2L1Q99501 681 aaPredicted RBP17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 SMG9Q9H0W8 520 aaKnown RBP17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 RETREG1Q9H6L5 497 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 KIF9Q9HAQ2 790 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 NEU3Q9UQ49 428 aa17.6■□□□□ 0.41
CCDC28B-202ENST00000421922 SHROOM3Q8TF72 1996 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 E2F8A0AVK6 867 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 BCLAF3A2AJT9 711 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 DRGXA6NNA5 263 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 SCAMP3O14828 347 aaKnown RBP17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 TSPAN3O60637 253 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 PAPLNO95428 1278 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 SLC6A4P31645 630 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 CHKAP35790 457 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 ADCY8P40145 1251 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 SLC10A2Q12908 348 aaPredicted RBP17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 CALCOCO2Q13137 446 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 CUL1Q13616 776 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 TRIP13Q15645 432 aaPredicted RBP17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 MAP9Q49MG5 647 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 HTR3DQ70Z44 454 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 ZNF683Q8IZ20 524 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 NPWQ8N729 165 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 FAM71DQ8N9W8 422 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 ITFG1Q8TB96 612 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 PNKPQ96T60 521 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 HINFPQ9BQA5 517 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 PCDH9Q9HC56 1237 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 CLDND1Q9NY35 253 aa17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 ZFP37Q9Y6Q3 630 aaPredicted RBP17.59■□□□□ 0.41
CCDC28B-202ENST00000421922 VCANP13611 3396 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 NUP205Q92621 2012 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 ARHGAP42A6NI28 874 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 TRDMT1O14717 391 aaKnown RBP17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 RAMP2O60895 175 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 CLDN11O75508 207 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 CNTN5O94779 1100 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 CYBBP04839 570 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 RBL1P28749 1068 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 OR1E1P30953 314 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 CDH4P55283 916 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 GALNT2Q10471 571 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 ADAM15Q13444 863 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 GRIN2CQ14957 1233 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 ATAT1Q5SQI0 421 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 WDR93Q6P2C0 686 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 Q6ZNB5 142 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 CIR1Q86X95 450 aaPredicted RBP17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 CFAP52Q8N1V2 620 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 BBOF1Q8ND07 529 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 ZSCAN18Q8TBC5 510 aaPredicted RBP17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 ADAMTS19Q8TE59 1207 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 USP13Q92995 863 aaPredicted RBP17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 WBP2Q969T9 261 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 LRRC45Q96CN5 670 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 RIPOR3Q96MK2 946 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 TTYH1Q9H313 450 aaPredicted RBP17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 C10orf88Q9H8K7 445 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 SEPT10Q9P0V9 454 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 STOML2Q9UJZ1 356 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 MTCH2Q9Y6C9 303 aa17.58■□□□□ 0.41
CCDC28B-202ENST00000421922 PRRC2BQ5JSZ5 2229 aaKnown RBP17.58■□□□□ 0.4
CCDC28B-202ENST00000421922 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 A0A1B0GVM2 712 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 ESYT3A0FGR9 886 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 TCAF2A6NFQ2 919 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 ZSCAN5CA6NGD5 496 aaPredicted RBP17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 NRG2O14511 850 aaPredicted RBP17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 MTSS1O43312 755 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 NEBLO76041 1014 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 GARSP41250 739 aaKnown RBP17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 NDST2P52849 883 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 VSNL1P62760 191 aa17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 ZNF177Q13360 481 aaPredicted RBP17.57■□□□□ 0.4
CCDC28B-202ENST00000421922 BRD3Q15059 726 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms