RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 GGA3Q9NZ52 723 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 KIAA1257Q9ULG3 409 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 USP3Q9Y6I4 520 aa16.78■□□□□ 0.28
SDC4-201ENST00000372733 DNAJA2O60884 412 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 MPSTP25325 297 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 RBP5P82980 135 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 GK3PQ14409 553 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 R3HDM1Q15032 1099 aaKnown RBP16.77■□□□□ 0.28
SDC4-201ENST00000372733 POTEAQ6S8J7 498 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 RBM44Q6ZP01 1051 aaKnown RBP16.77■□□□□ 0.28
SDC4-201ENST00000372733 FAM131BQ86XD5 332 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 ADAM32Q8TC27 787 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 P2RY11Q96G91 374 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 DNAJC1Q96KC8 554 aaKnown RBP16.77■□□□□ 0.28
SDC4-201ENST00000372733 C11orf84Q9BUA3 381 aaPredicted RBP16.77■□□□□ 0.28
SDC4-201ENST00000372733 CXCL16Q9H2A7 254 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 TCF7L2Q9NQB0 619 aa16.77■□□□□ 0.28
SDC4-201ENST00000372733 EVPLQ92817 2033 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 A0A087WZ62 844 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 G3V2L1 256 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 AP1G1O43747 822 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 USP12O75317 370 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 LTFP02788 710 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 CHRNGP07510 517 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 XRCC1P18887 633 aaPredicted RBP16.77■□□□□ 0.27
SDC4-201ENST00000372733 PIK3R1P27986 724 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 GARSP41250 739 aaKnown RBP16.77■□□□□ 0.27
SDC4-201ENST00000372733 PTPN9P43378 593 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 RANBP1P43487 201 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 CCR10P46092 362 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 ATXN3P54252 364 aaPredicted RBP16.77■□□□□ 0.27
SDC4-201ENST00000372733 RPL26P61254 145 aaKnown RBP16.77■□□□□ 0.27
SDC4-201ENST00000372733 CNGA3Q16281 694 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 TREML2Q5T2D2 321 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 HACE1Q8IYU2 909 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 MARVELD2Q8N4S9 558 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 SPATA33Q96N06 139 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 FDXACB1Q9BRP7 624 aaPredicted RBP16.77■□□□□ 0.27
SDC4-201ENST00000372733 TMPRSS4Q9NRS4 437 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 STK39Q9UEW8 545 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 SNX9Q9Y5X1 595 aa16.77■□□□□ 0.27
SDC4-201ENST00000372733 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 VILLO15195 856 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 CREB3O43889 395 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 CRTAMO95727 393 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 AMHP03971 560 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 TFAP2AP05549 437 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 TGFB3P10600 412 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 LCP1P13796 627 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 ARF4P18085 180 aaPredicted RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 GLDCP23378 1020 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 ACAT1P24752 427 aaKnown RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 SERPINB8P50452 374 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 PKNOX1P55347 436 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 TTLL12Q14166 644 aaPredicted RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 CCDC153Q494R4 210 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 PABPC1LQ4VXU2 614 aaKnown RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 STRA8Q7Z7C7 330 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 METTL25Q8N6Q8 603 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 RNF148Q8N7C7 305 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 FAM81AQ8TBF8 368 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 ZNF669Q96BR6 464 aaPredicted RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 KIF12Q96FN5 646 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 HIC2Q96JB3 615 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 AGAP2Q99490 1192 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 RBBP8Q99708 897 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 CPNE1Q99829 537 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 DPEP3Q9H4B8 488 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 C6orf203Q9P0P8 240 aaPredicted RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 POLBP06746 335 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 PHKA2P46019 1235 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 GMPSP49915 693 aaPredicted RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 TNFAIP2Q03169 654 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 FLOT2Q14254 428 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 TP53INP2Q8IXH6 220 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 C7orf31Q8N865 590 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 PIP4K2CQ8TBX8 421 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 CNBD2Q96M20 576 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 EPB41L1Q9H4G0 881 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 EIF2B3Q9NR50 452 aaKnown RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 ATXN10Q9UBB4 475 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 APPL1Q9UKG1 709 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 MAGED2Q9UNF1 606 aaPredicted RBP16.76■□□□□ 0.27
SDC4-201ENST00000372733 HES2Q9Y543 173 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 AP4B1Q9Y6B7 739 aa16.76■□□□□ 0.27
SDC4-201ENST00000372733 ATP9BO43861 1147 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 CLPTM1O96005 669 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 PGK2P07205 417 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 ATP6V1B1P15313 513 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 MAGEA12P43365 314 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 MAP7Q14244 749 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 NADK2Q4G0N4 442 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 CELF3Q5SZQ8 465 aaKnown RBP16.75■□□□□ 0.27
SDC4-201ENST00000372733 PLPPR4Q7Z2D5 763 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 EXOC8Q8IYI6 725 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 DSELQ8IZU8 1212 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 CCNYQ8ND76 341 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 OR52K1Q8NGK4 314 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 CNKSR2Q8WXI2 1034 aa16.75■□□□□ 0.27
SDC4-201ENST00000372733 CENPIQ92674 756 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms