RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 MT-CO1P00395 513 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 MFSD4BQ5TF39 518 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 TTC23Q5W5X9 447 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 MILR1Q7Z6M3 343 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF605Q86T29 641 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZCCHC9Q8N567 271 aaKnown RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF483Q8TF39 744 aaPredicted RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 FNIP1Q8TF40 1166 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 COQ7Q99807 217 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ACTL7BQ9Y614 415 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 A0A0G2JLW4 131 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 APOC4-APOC2K7ER74 178 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 MFN2O95140 757 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 APOC2P02655 101 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 SSTR1P30872 391 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 DSG3P32926 999 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 HK2P52789 917 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 NEDD8Q15843 81 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 TCHHL1Q5QJ38 904 aaPredicted RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF57Q68EA5 555 aaPredicted RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 METTL7BQ6UX53 244 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZPBP2Q6X784 338 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 NT5DC3Q86UY8 548 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ADHFE1Q8IWW8 467 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 RTL3Q8N8U3 475 aaKnown RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ITFG1Q8TB96 612 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ETNPPLQ8TBG4 499 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 SYT15Q9BQS2 421 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 C1orf50Q9BV19 199 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 TNPO3Q9Y5L0 923 aaKnown RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 KPNA6O60684 536 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 SEC22BO75396 215 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 EIF2B2P49770 351 aaKnown RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 NEK3P51956 506 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 ATP12AP54707 1039 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 NAA20P61599 178 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 NT5DC1Q5TFE4 455 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 YTHDF3Q7Z739 585 aaKnown RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 PTPRUQ92729 1446 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 SMAD5Q99717 465 aaKnown RBP13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 PDCD2LQ9BRP1 358 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 DCUN1D5Q9BTE7 237 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 MBD2Q9UBB5 411 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 DPP7Q9UHL4 492 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 TSPAN16Q9UKR8 245 aa13.47□□□□□ -0.25
CSPG4P11-201ENST00000560634 RGS14O43566 566 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 URODP06132 367 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 ERVK-10P10266 1014 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 EIF4BP23588 611 aaKnown RBP13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 S100A3P33764 101 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 EPHB3P54753 998 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 STARD3Q14849 445 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 TMC7Q7Z402 723 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 FUKQ8N0W3 1084 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 FHDC1Q9C0D6 1143 aaPredicted RBP13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 CYLDQ9NQC7 956 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 UBP1Q9NZI7 540 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 GGA2Q9UJY4 613 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 PLA2G4CQ9UP65 541 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 H3BN98 237 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 RBAK-RBAKDNI3L0D1 243 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 C2CD2LO14523 706 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 DCXO43602 365 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 GTF2E2P29084 291 aaKnown RBP13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 GPR15P49685 360 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 GNA13Q14344 377 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZNF470Q6ECI4 717 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 KIAA0408Q6ZU52 694 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 ULK2Q8IYT8 1036 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 FBXL16Q8N461 479 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 POP5Q969H6 163 aaKnown RBP13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 ZDHHC15Q96MV8 337 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 SERPINB11Q96P15 392 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 KANSL3Q9P2N6 904 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 GSTK1Q9Y2Q3 226 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 NKRFO15226 690 aaKnown RBP eCLIP13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 STAT5AP42229 794 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 BACE1P56817 501 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 GSTA3Q16772 222 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 INO80DQ53TQ3 878 aaPredicted RBP13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 MFSD7Q6UXD7 560 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 CCDC33Q8N5R6 958 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 LPCAT1Q8NF37 534 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 ACER1Q8TDN7 264 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 SLC35C1Q96A29 364 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 TEKT5Q96M29 485 aa13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 AGO4Q9HCK5 861 aaKnown RBP13.46□□□□□ -0.25
CSPG4P11-201ENST00000560634 CNTNAP4Q9C0A0 1308 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 VAPBO95292 243 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 OR56A5P0C7T3 313 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 MGAT1P26572 445 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 IFI35P80217 286 aaPredicted RBP13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 AMPD2Q01433 879 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 FAM187BQ17R55 369 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 INTS11Q5TA45 600 aaKnown RBP13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 SYTL1Q8IYJ3 562 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 AADATQ8N5Z0 425 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 DNERQ8NFT8 737 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 ZNF398Q8TD17 642 aa13.46□□□□□ -0.26
CSPG4P11-201ENST00000560634 TATDN2Q93075 761 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms