RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TBC1D31Q96DN5 1066 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 PCDH18Q9HCL0 1135 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 AMFRQ9UKV5 643 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 CA14Q9ULX7 337 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 CLEC4EQ9ULY5 219 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 NCOR1O75376 2440 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 DRGXA6NNA5 263 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 GOT1P17174 413 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 EPHB2P29323 1055 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 ARSEP51690 589 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 TPI1P60174 286 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 SLC44A4Q53GD3 710 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 MPP7Q5T2T1 576 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 TTC39BQ5VTQ0 682 aaPredicted RBP21.85■■□□□ 1.09
VPS29-206ENST00000549578 KCTD6Q8NC69 237 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 RAPGEF5Q92565 580 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 ZYG11BQ9C0D3 744 aa21.85■■□□□ 1.09
VPS29-206ENST00000549578 PPARGC1AQ9UBK2 798 aaKnown RBP21.85■■□□□ 1.09
VPS29-206ENST00000549578 GOLGA6L9A6NEM1 432 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 SPECC1L-ADORA2AF8WAN1 911 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 PI4K2BG5E9Z4 385 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 EEF2KO00418 725 aaKnown RBP21.84■■□□□ 1.09
VPS29-206ENST00000549578 CACNG3O60359 315 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 KRT1P04264 644 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 CTHP32929 405 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 CTNNA1P35221 906 aaKnown RBP21.84■■□□□ 1.09
VPS29-206ENST00000549578 SLC6A11P48066 632 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 TFAP2DQ7Z6R9 452 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 ETFBKMTQ8IXQ9 262 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 CARNMT1Q8N4J0 409 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 TRIM58Q8NG06 486 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 WFDC5Q8TCV5 224 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 CWC15Q9P013 229 aaKnown RBP21.84■■□□□ 1.09
VPS29-206ENST00000549578 FBXL21Q9UKT6 434 aa21.84■■□□□ 1.09
VPS29-206ENST00000549578 DOCK4Q8N1I0 1966 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 A0A1B0GVM2 712 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 LRRD1A4D1F6 860 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 TCAF2A6NFQ2 919 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 TRIM24O15164 1050 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 TULP3O75386 442 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 HOXC13P31276 330 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 OPRD1P41143 372 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 MMRN1Q13201 1228 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 DPYSL3Q14195 570 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 RNF43Q68DV7 783 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 TXNDC11Q6PKC3 985 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 RFX8Q6ZV50 586 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 MFN1Q8IWA4 741 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 FAM71BQ8TC56 605 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 XPO6Q96QU8 1125 aaKnown RBP21.83■■□□□ 1.09
VPS29-206ENST00000549578 CALN1Q9BXU9 219 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 C8orf33Q9H7E9 229 aaPredicted RBP21.83■■□□□ 1.09
VPS29-206ENST00000549578 DNAJC17Q9NVM6 304 aaKnown RBP21.83■■□□□ 1.09
VPS29-206ENST00000549578 DDX56Q9NY93 547 aaKnown RBP21.83■■□□□ 1.09
VPS29-206ENST00000549578 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.83■■□□□ 1.09
VPS29-206ENST00000549578 PCDHA3Q9Y5H8 950 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 MUC3AQ02505 3323 aa21.83■■□□□ 1.09
VPS29-206ENST00000549578 TTC28Q96AY4 2481 aa21.83■■□□□ 1.08
VPS29-206ENST00000549578 H3BRJ5 948 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 LUC7L3O95232 432 aaKnown RBP21.82■■□□□ 1.08
VPS29-206ENST00000549578 KDELR1P24390 212 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 CTNNA2P26232 953 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 ARL4AP40617 200 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 DNA2P51530 1060 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 CDH4P55283 916 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 ZXDAP98168 799 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 MESP2Q0VG99 397 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 MLF2Q15773 248 aaPredicted RBP21.82■■□□□ 1.08
VPS29-206ENST00000549578 TPRG1Q6ZUI0 275 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 RALGPS2Q86X27 583 aaPredicted RBP21.82■■□□□ 1.08
VPS29-206ENST00000549578 TSC1Q92574 1164 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 ALG3Q92685 438 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 RNF25Q96BH1 459 aaPredicted RBP21.82■■□□□ 1.08
VPS29-206ENST00000549578 CSPG4P5Q96PW8 444 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 ARHGEF3Q9NR81 526 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 KCND1Q9NSA2 647 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 WNT16Q9UBV4 365 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 ZKSCAN5Q9Y2L8 839 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.82■■□□□ 1.08
VPS29-206ENST00000549578 BDP1A6H8Y1 2624 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 MIA3Q5JRA6 1907 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 F5P12259 2224 aa21.82■■□□□ 1.08
VPS29-206ENST00000549578 CCDC66A2RUB6 948 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 H0Y626 953 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 DAPK3O43293 454 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 KIF5CO60282 957 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 CLDN11O75508 207 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 IL4RP24394 825 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 CDH18Q13634 790 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 PDK2Q15119 407 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 ODF2Q5BJF6 829 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 FSCBQ5H9T9 825 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 ZNF569Q5MCW4 686 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 ASTLQ6HA08 431 aaPredicted RBP21.81■■□□□ 1.08
VPS29-206ENST00000549578 CHST9Q7L1S5 443 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 NLRP14Q86W24 1093 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 KATNAL2Q8IYT4 538 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 ZNF212Q9UDV6 495 aa21.81■■□□□ 1.08
VPS29-206ENST00000549578 KRBA1A5PL33 1030 aa21.8■■□□□ 1.08
VPS29-206ENST00000549578 SHISA7A6NL88 538 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 181.2 ms