RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 MSANTD3Q96H12 275 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 KCTD15Q96SI1 283 aaPredicted RBP17.66■□□□□ 0.42
LIG1-204ENST00000542460 ZYG11BQ9C0D3 744 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 RETREG1Q9H6L5 497 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 KCND1Q9NSA2 647 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 DDX56Q9NY93 547 aaKnown RBP17.66■□□□□ 0.42
LIG1-204ENST00000542460 STIM2Q9P246 746 aa17.66■□□□□ 0.42
LIG1-204ENST00000542460 A0A1B0GVM2 712 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 TCAF2A6NFQ2 919 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 USP27XA6NNY8 438 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 SPECC1L-ADORA2AF8WAN1 911 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 CACNG3O60359 315 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 CLDN11O75508 207 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 EPHB2P29323 1055 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 EIF2DP41214 584 aaKnown RBP17.65■□□□□ 0.42
LIG1-204ENST00000542460 SOX9P48436 509 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 HCAR3P49019 387 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 CDH4P55283 916 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 CDH6P55285 790 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 KRT81Q14533 505 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 PDK2Q15119 407 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 RWDD4Q6NW29 188 aaKnown RBP17.65■□□□□ 0.42
LIG1-204ENST00000542460 C1orf228Q6PIY5 440 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 CHST9Q7L1S5 443 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 CCDC117Q8IWD4 279 aaPredicted RBP17.65■□□□□ 0.42
LIG1-204ENST00000542460 NAT16Q8N8M0 369 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 ZNF557Q8N988 423 aaPredicted RBP17.65■□□□□ 0.42
LIG1-204ENST00000542460 FAM71BQ8TC56 605 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 SLC2A11Q9BYW1 496 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 EPHX3Q9H6B9 360 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 PCDH18Q9HCL0 1135 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 FBXL21Q9UKT6 434 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 MYO10Q9HD67 2058 aa17.65■□□□□ 0.42
LIG1-204ENST00000542460 CCDC66A2RUB6 948 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 MIF4GDA9UHW6 222 aaKnown RBP17.64■□□□□ 0.41
LIG1-204ENST00000542460 EEF2KO00418 725 aaKnown RBP17.64■□□□□ 0.41
LIG1-204ENST00000542460 FTCDO95954 541 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 HOXC13P31276 330 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 CTHP32929 405 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 CTNNA1P35221 906 aaKnown RBP17.64■□□□□ 0.41
LIG1-204ENST00000542460 ARL4AP40617 200 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 TPI1P60174 286 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 ZXDAP98168 799 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 MLF2Q15773 248 aaPredicted RBP17.64■□□□□ 0.41
LIG1-204ENST00000542460 IER5LQ5T953 404 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 MFN1Q8IWA4 741 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 ETFBKMTQ8IXQ9 262 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 EXOC4Q96A65 974 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 CHFRQ96EP1 664 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 C1QTNF1Q9BXJ1 281 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 MPP6Q9NZW5 540 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 RCOR3Q9P2K3 495 aaPredicted RBP17.64■□□□□ 0.41
LIG1-204ENST00000542460 FBXO10Q9UK96 956 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 PCDHA3Q9Y5H8 950 aa17.64■□□□□ 0.41
LIG1-204ENST00000542460 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.63■□□□□ 0.41
LIG1-204ENST00000542460 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.63■□□□□ 0.41
LIG1-204ENST00000542460 H0Y626 953 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 H3BRJ5 948 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 MAN2B1O00754 1011 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 FGF10O15520 208 aaPredicted RBP17.63■□□□□ 0.41
LIG1-204ENST00000542460 DAPK3O43293 454 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 KIF5CO60282 957 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 TULP3O75386 442 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 CNTN5O94779 1100 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 LUC7L3O95232 432 aaKnown RBP17.63■□□□□ 0.41
LIG1-204ENST00000542460 RHOQP17081 205 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 GOT1P17174 413 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 CTNNA2P26232 953 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 OPRD1P41143 372 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 IRAK1P51617 712 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 ARSEP51690 589 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 PRKCQQ04759 706 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 ZNF177Q13360 481 aaPredicted RBP17.63■□□□□ 0.41
LIG1-204ENST00000542460 PREPLQ4J6C6 727 aaPredicted RBP17.63■□□□□ 0.41
LIG1-204ENST00000542460 ALFQ53S48 1182 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 ODF2Q5BJF6 829 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 RFX8Q6ZV50 586 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 CIR1Q86X95 450 aaPredicted RBP17.63■□□□□ 0.41
LIG1-204ENST00000542460 KATNAL2Q8IYT4 538 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 CARNMT1Q8N4J0 409 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 FIBINQ8TAL6 211 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 CATSPERBQ9H7T0 1116 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 ARHGEF3Q9NR81 526 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 DNAJC17Q9NVM6 304 aaKnown RBP17.63■□□□□ 0.41
LIG1-204ENST00000542460 KLHL11Q9NVR0 708 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 CWC15Q9P013 229 aaKnown RBP17.63■□□□□ 0.41
LIG1-204ENST00000542460 DEC1Q9P2X7 70 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 CA14Q9ULX7 337 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 NEU3Q9UQ49 428 aa17.63■□□□□ 0.41
LIG1-204ENST00000542460 LRRD1A4D1F6 860 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 DCXO43602 365 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 KDELR1P24390 212 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 SLC6A11P48066 632 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 DGKGP49619 791 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 CDH18Q13634 790 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 DPYSL3Q14195 570 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 TPRG1Q6ZUI0 275 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 C12orf40Q86WS4 652 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 UBL4BQ8N7F7 174 aa17.62■□□□□ 0.41
LIG1-204ENST00000542460 RAPGEF5Q92565 580 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms