RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 RPL10AP62906 217 aaKnown RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 KPNB1Q14974 876 aaKnown RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 PAFAH1B3Q15102 231 aaKnown RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 FAM110CQ1W6H9 321 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 RASSF3Q86WH2 238 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 TREML1Q86YW5 311 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 ANKRD27Q96NW4 1050 aa13.51□□□□□ -0.25
LDLR-203ENST00000535915 KLHL8Q9P2G9 620 aaPredicted RBP13.51□□□□□ -0.25
LDLR-203ENST00000535915 SF3B1O75533 1304 aaKnown RBP eCLIP13.51□□□□□ -0.259e-6■■■■■ 68.9
LDLR-203ENST00000535915 CAPN14A8MX76 684 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 ITGA2BP08514 1039 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 MYL3P08590 195 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 ERVK-10P10266 1014 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 KCNA4P22459 653 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 MLH1P40692 756 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 SESN3P58005 492 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 ADAM17P78536 824 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 GRIK3Q13003 919 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 OLIG2Q13516 323 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 DPYSQ14117 519 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 CCDC6Q16204 474 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 BNIPLQ7Z465 357 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 KCTD13Q8WZ19 329 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 NAF1Q96HR8 494 aaKnown RBP13.5□□□□□ -0.25
LDLR-203ENST00000535915 ZFP42Q96MM3 310 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 AGAP3Q96P47 875 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 PARK7Q99497 189 aaKnown RBP13.5□□□□□ -0.25
LDLR-203ENST00000535915 BATF3Q9NR55 127 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 KRT82Q9NSB4 513 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 EMCNQ9ULC0 261 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 RPS6KL1Q9Y6S9 549 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 KLHL33A6NCF5 533 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 FAM72CH0Y354 149 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 FAM200BP0CF97 657 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 IGFBP6P24592 240 aaPredicted RBP13.5□□□□□ -0.25
LDLR-203ENST00000535915 CDC25CP30307 473 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 PGM1P36871 562 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 KDSRQ06136 332 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 CDK18Q07002 472 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 STXBP5Q5T5C0 1151 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 FAM72AQ5TYM5 149 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 OLFML2BQ68BL8 750 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 TRIM68Q6AZZ1 485 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 FAM72DQ6L9T8 149 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 FAM72BQ86X60 149 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.5□□□□□ -0.25
LDLR-203ENST00000535915 ARHGAP24Q8N264 748 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 RNF169Q8NCN4 708 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 SLC2A13Q96QE2 648 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 MMADHCQ9H3L0 296 aaPredicted RBP13.5□□□□□ -0.25
LDLR-203ENST00000535915 SPON1Q9HCB6 807 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 CACNG4Q9UBN1 327 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 DCDC2Q9UHG0 476 aa13.5□□□□□ -0.25
LDLR-203ENST00000535915 PTGESO14684 152 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 NRP1O14786 923 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 DCLK1O15075 740 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 LYPLA1O75608 230 aaPredicted RBP13.49□□□□□ -0.25
LDLR-203ENST00000535915 GSRP00390 522 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 CRYBB1P53674 252 aaPredicted RBP13.49□□□□□ -0.25
LDLR-203ENST00000535915 NAB1Q13506 487 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 RCN1Q15293 331 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 ACSBG2Q5FVE4 666 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 KIAA0319Q5VV43 1072 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 MBLAC2Q68D91 279 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 TMPRSS6Q8IU80 811 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 WDR75Q8IWA0 830 aaKnown RBP13.49□□□□□ -0.25
LDLR-203ENST00000535915 OR52K1Q8NGK4 314 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 PGLYRP2Q96PD5 576 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 SH3GL3Q99963 347 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 LBHD1Q9BQE6 289 aaPredicted RBP13.49□□□□□ -0.25
LDLR-203ENST00000535915 EBF4Q9BQW3 602 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 ULBP1Q9BZM6 244 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 DDX43Q9NXZ2 648 aaKnown RBP13.49□□□□□ -0.25
LDLR-203ENST00000535915 IGSF9Q9P2J2 1179 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 LRRC42Q9Y546 428 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 SCN4AP35499 1836 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 ITM2AO43736 263 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 PLIN3O60664 434 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 USP12O75317 370 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 CAPN15O75808 1086 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 ERCC2P18074 760 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 TYK2P29597 1187 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 LRPAP1P30533 357 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 ADRA1BP35368 520 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 SLC1A6P48664 564 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 DBN1Q16643 649 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 PDZD4Q76G19 769 aaPredicted RBP13.49□□□□□ -0.25
LDLR-203ENST00000535915 PIWIL2Q8TC59 973 aaKnown RBP13.49□□□□□ -0.25
LDLR-203ENST00000535915 WDR60Q8WVS4 1066 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 STMN2Q93045 179 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 CERS2Q96G23 380 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 STOML1Q9UBI4 398 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 YJEFN3A6XGL0 299 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 FGF3P11487 239 aaPredicted RBP13.49□□□□□ -0.25
LDLR-203ENST00000535915 TPI1P60174 286 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 BEX3Q00994 111 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 PPM1JQ5JR12 505 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 SPANXN3Q5MJ09 141 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 FBXO27Q8NI29 283 aa13.49□□□□□ -0.25
LDLR-203ENST00000535915 FAM161BQ96MY7 647 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms