RNA–Protein interactions for RNA: ENST00000527299.1

CLNS1A-209, Transcript of chloride nucleotide-sensitive channel 1A, human

TSL 2

Gene CLNS1A, Length 387 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLNS1A-209	ENST00000527299	PAG1	Q9NWQ8	432 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	HYPK	Q9NX55	129 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	DDX56	Q9NY93	547 aa	Known RBP	3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ADAM22	Q9P0K1	906 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	USP36	Q9P275	1121 aa	Known RBP	3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TRIM10	Q9UDY6	481 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	POLG2	Q9UHN1	485 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RPL26L1	Q9UNX3	145 aa	Known RBP	3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	DNAJC16	Q9Y2G8	782 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PCDHB6	Q9Y5E3	794 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TTC21A	Q8NDW8	1320 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PNPLA6	Q8IY17	1366 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KIAA0232	Q92628	1395 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ABCC12	Q96J65	1359 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	JCAD	Q9P266	1359 aa		3.88	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PDS5B	Q9NTI5	1447 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SETD1A	O15047	1707 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	IQSEC2	Q5JU85	1478 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SH3PXD2B	A1X283	911 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	MACROD2	A1Z1Q3	448 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CGB1	A6NKQ9	187 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SNTN	A6NMZ2	147 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SYCE1L	A8MT33	242 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	HNRNPCL2	B2RXH8	293 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	IKBKB	O14920	756 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CASQ2	O14958	399 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	MCF2L	O15068	1137 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RNF113A	O15541	343 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TRAPPC3	O43617	180 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	STX10	O60499	249 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	HNRNPCL1	O60812	293 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	HSF2BP	O75031	334 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TMCC2	O75069	709 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GUCY1B2	O75343	617 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TOMM70	O94826	608 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SEC24D	O94855	1032 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TJP3	O95049	919 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CSPG5	O95196	566 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ABCB1	P08183	1280 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RHOXF2B	P0C7M4	288 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SPATA31D3	P0C874	917 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CALM1	P0DP23	149 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CALM2	P0DP24	149 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CALM3	P0DP25	149 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PIM1	P11309	404 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GYS1	P13807	737 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	IDE	P14735	1019 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ZKSCAN1	P17029	563 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NR1D1	P20393	614 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KCNA3	P22001	575 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TNFRSF8	P28908	595 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GNA11	P29992	359 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PSMC2	P35998	433 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	EPS15	P42566	896 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KRT6C	P48668	564 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NR2C2	P49116	596 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ALDH5A1	P51649	535 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ARFIP2	P53365	341 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SNX16	P57768	344 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	OLR1	P78380	273 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KRT85	P78386	507 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SIM1	P81133	766 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TMF1	P82094	1093 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	OCRL	Q01968	901 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	REL	Q04864	619 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SCAP	Q12770	1279 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ZNF169	Q14929	603 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	MOG	Q16653	247 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KLHL38	Q2WGJ6	581 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	KRT71	Q3SY84	523 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TTMP	Q5BVD1	217 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ARMC4	Q5T2S8	1044 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	C6orf183	Q5T699	404 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PPP4R4	Q6NUP7	873 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	EMB	Q6PCB8	327 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CCNI2	Q6ZMN8	369 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SPATA31D4	Q6ZUB0	917 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	UNC13D	Q70J99	1090 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ANO5	Q75V66	913 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	RUFY3	Q7L099	469 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FASTKD5	Q7L8L6	764 aa	Known RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	ITIH5	Q86UX2	942 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PNMA8A	Q86V59	439 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SPATA24	Q86W54	205 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SPATA2L	Q8IUW3	424 aa	Predicted RBP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	PHYKPL	Q8IUZ5	450 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	TMEM139	Q8IV31	216 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	SLC44A3	Q8N4M1	653 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FAM133A	Q8N9E0	248 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	CHST14	Q8NCH0	376 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	MDM1	Q8TC05	714 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	HCAR2	Q8TDS4	363 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	FBXO41	Q8TF61	875 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	NAT14	Q8WUY8	206 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	OSCP1	Q8WVF1	389 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	GAB3	Q8WWW8	586 aa		3.87	□□□□□ -1.79
CLNS1A-209	ENST00000527299	DNAJC9	Q8WXX5	260 aa		3.87	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms