RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SYPL2Q5VXT5 272 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 ZCCHC23Q6ZST2 131 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 SYT17Q9BSW7 474 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 MED10Q9BTT4 135 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 BRD8Q9H0E9 1235 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 TMPRSS4Q9NRS4 437 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 CAPN9O14815 690 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 TOP3BO95985 862 aaKnown RBP21.79■■□□□ 1.08
VPS28-205ENST00000526204 SERPINE1P05121 402 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 FAM200BP0CF97 657 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 FGF3P11487 239 aaPredicted RBP21.79■■□□□ 1.08
VPS28-205ENST00000526204 VHLP40337 213 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 SLC1A6P48664 564 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 NDUFV1P49821 464 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 IRX4P78413 519 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 SCAPQ12770 1279 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 RCN1Q15293 331 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 C16orf46Q6P387 395 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 SMG8Q8ND04 991 aaKnown RBP21.79■■□□□ 1.08
VPS28-205ENST00000526204 CERS2Q96G23 380 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 PARK7Q99497 189 aaKnown RBP21.79■■□□□ 1.08
VPS28-205ENST00000526204 CEP41Q9BYV8 373 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 C1orf21Q9H246 121 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 LRRC40Q9H9A6 602 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 ADAM28Q9UKQ2 775 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 RPS6KL1Q9Y6S9 549 aa21.79■■□□□ 1.08
VPS28-205ENST00000526204 F8W8V4 182 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 PSMG1O95456 288 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 ACADSP16219 412 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 PSEN2P49810 448 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 FRG1Q14331 258 aaKnown RBP21.78■■□□□ 1.08
VPS28-205ENST00000526204 HIC1Q14526 733 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 TEDDM1Q5T9Z0 273 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 WSCD1Q658N2 575 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 PPP4R1Q8TF05 950 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 DNAJC9Q8WXX5 260 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 PIH1D1Q9NWS0 290 aaKnown RBP21.78■■□□□ 1.08
VPS28-205ENST00000526204 KLHL8Q9P2G9 620 aaPredicted RBP21.78■■□□□ 1.08
VPS28-205ENST00000526204 SLC17A6Q9P2U8 582 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 PSAT1Q9Y617 370 aa21.78■■□□□ 1.08
VPS28-205ENST00000526204 HAS3O00219 553 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 TREHO43280 583 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 MTSS1O43312 755 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 AOC1P19801 751 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 ACAT1P24752 427 aaKnown RBP21.77■■□□□ 1.08
VPS28-205ENST00000526204 TYK2P29597 1187 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 ALDH18A1P54886 795 aaKnown RBP21.77■■□□□ 1.08
VPS28-205ENST00000526204 SLC34A1Q06495 639 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 BLMHQ13867 455 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 MDH1BQ5I0G3 518 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 TLK2Q86UE8 772 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 ARRDC4Q8NCT1 418 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 RBM15BQ8NDT2 890 aaKnown RBP21.77■■□□□ 1.08
VPS28-205ENST00000526204 SLC7A14Q8TBB6 771 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 PPP1R13LQ8WUF5 828 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 STX18Q9P2W9 335 aaKnown RBP21.77■■□□□ 1.08
VPS28-205ENST00000526204 ERI2A8K979 691 aaKnown RBP21.77■■□□□ 1.08
VPS28-205ENST00000526204 C9IYK1 514 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 AP2A1O95782 977 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 PROCP04070 461 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 ERCC2P18074 760 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 MX2P20592 715 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 MAP3K7CLP57077 242 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 GJA9P57773 515 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 RPL10AP62906 217 aaKnown RBP21.77■■□□□ 1.08
VPS28-205ENST00000526204 ZRSR2Q15696 482 aaKnown RBP21.77■■□□□ 1.08
VPS28-205ENST00000526204 CCDC153Q494R4 210 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 INTS6LQ5JSJ4 861 aaKnown RBP21.77■■□□□ 1.08
VPS28-205ENST00000526204 LMNTD2Q8IXW0 634 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 WDR60Q8WVS4 1066 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 BFARQ9NZS9 450 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 DNAJC16Q9Y2G8 782 aa21.77■■□□□ 1.08
VPS28-205ENST00000526204 PDCD11Q14690 1871 aaKnown RBP21.77■■□□□ 1.08
VPS28-205ENST00000526204 NVLO15381 856 aaKnown RBP21.76■■□□□ 1.07
VPS28-205ENST00000526204 TM7SF2O76062 418 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 ERVK-10P10266 1014 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 YBX3P16989 372 aaKnown RBP eCLIP21.76■■□□□ 1.071e-7■□□□□ 9.8
VPS28-205ENST00000526204 PTPN3P26045 913 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 CPA2P48052 419 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 CDK7P50613 346 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 SEMA3BQ13214 749 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 RCN2Q14257 317 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 PCLAFQ15004 111 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 MUM1Q2TAK8 710 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 C6orf163Q5TEZ5 329 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 NET1Q7Z628 596 aaPredicted RBP21.76■■□□□ 1.07
VPS28-205ENST00000526204 NETO2Q8NC67 525 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 ISL2Q96A47 359 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 PPP1R10Q96QC0 940 aaKnown RBP21.76■■□□□ 1.07
VPS28-205ENST00000526204 ZNF408Q9H9D4 720 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 CNGB3Q9NQW8 809 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 KRT82Q9NSB4 513 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 RRN3Q9NYV6 651 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 FBXW11Q9UKB1 542 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 APOBEC2Q9Y235 224 aaKnown RBP21.76■■□□□ 1.07
VPS28-205ENST00000526204 KCNK1O00180 336 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 PTGESO14684 152 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 KIF1CO43896 1103 aaKnown RBP21.76■■□□□ 1.07
VPS28-205ENST00000526204 KRT36O76013 467 aa21.76■■□□□ 1.07
VPS28-205ENST00000526204 KLHL2O95198 593 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms