RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 SULT6B1Q6IMI4 303 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 GRHL2Q6ISB3 625 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 VSTM1Q6UX27 236 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 DCDC5Q6ZRR9 648 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 PNLDC1Q8NA58 520 aaKnown RBP4.39□□□□□ -1.71
CD44-219ENST00000525685 ADAMTS18Q8TE60 1221 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 HMGB4Q8WW32 186 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 SMG7Q92540 1137 aaKnown RBP4.39□□□□□ -1.71
CD44-219ENST00000525685 C3orf49Q96BT1 292 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 CTHRC1Q96CG8 243 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 REXO5Q96IC2 774 aaKnown RBP4.39□□□□□ -1.71
CD44-219ENST00000525685 FAR2Q96K12 515 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 ZNF778Q96MU6 729 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 SNX18Q96RF0 628 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 WDR24Q96S15 920 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 RTKNQ9BST9 563 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 KATNAL1Q9BW62 490 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 SORBS1Q9BX66 1292 aaKnown RBP4.39□□□□□ -1.71
CD44-219ENST00000525685 ELAC1Q9H777 363 aaKnown RBP4.39□□□□□ -1.71
CD44-219ENST00000525685 GRHPRQ9UBQ7 328 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.39□□□□□ -1.71
CD44-219ENST00000525685 NFU1Q9UMS0 254 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 PCDHB7Q9Y5E2 793 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 HEMK1Q9Y5R4 338 aaPredicted RBP4.39□□□□□ -1.71
CD44-219ENST00000525685 ADGRF5Q8IZF2 1346 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 ADGRB1O14514 1584 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 METP08581 1390 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 PIK3R4Q99570 1358 aa4.39□□□□□ -1.71
CD44-219ENST00000525685 PTCH1Q13635 1447 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 NALCNQ8IZF0 1738 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 WDR91A4D1P6 747 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 OR2W5A6NFC9 320 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 EFCAB8A8MWE9 144 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 POC1B-GALNT4F8VUJ3 575 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 CLIC1O00299 241 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 PCDH17O14917 1159 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 FYB1O15117 783 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 EIF5BO60841 1220 aaKnown RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 PPP6R2O75170 966 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 TAF5LO75529 589 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 RNF8O76064 485 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 ITGA5P08648 1049 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 NHLRC4P0CG21 123 aaPredicted RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 GALNSP34059 522 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 GRK6P43250 576 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 ZNF81P51508 661 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 AP2B1P63010 937 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 GALNT1Q10472 559 aaPredicted RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 KCNJ12Q14500 433 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 KCNB1Q14721 858 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 EZH2Q15910 746 aaKnown RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 CNGA3Q16281 694 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 SRSF7Q16629 238 aaKnown RBP eCLIP4.38□□□□□ -1.71
CD44-219ENST00000525685 PFKFB3Q16875 520 aaPredicted RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 BTBD16Q32M84 506 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 ZNF66Q6ZN08 573 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 RFX8Q6ZV50 586 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 SMC5Q8IY18 1101 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 CLASRPQ8N2M8 674 aaKnown RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 GALNT4Q8N4A0 578 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.38□□□□□ -1.71
CD44-219ENST00000525685 SCARB1Q8WTV0 552 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 SLC22A17Q8WUG5 538 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 TRAPPC12Q8WVT3 735 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 PRR11Q96HE9 360 aaPredicted RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 MAGEH1Q9H213 219 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 TP63Q9H3D4 680 aaPredicted RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 SAP30LQ9HAJ7 183 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 SEPSECSQ9HD40 501 aaKnown RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 ARL8BQ9NVJ2 186 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 UBE2J1Q9Y385 318 aaPredicted RBP4.38□□□□□ -1.71
CD44-219ENST00000525685 TMEM94Q12767 1356 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 KIAA1210Q9ULL0 1709 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 TECPR2O15040 1411 aa4.38□□□□□ -1.71
CD44-219ENST00000525685 TRPM1Q7Z4N2 1603 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3DA0A087WVF3 549 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3IA0A087WXS9 549 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3EA0A087X179 549 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3KA0A087X1G2 549 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3BA6NDS4 549 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3FA6NER0 549 aaPredicted RBP4.37□□□□□ -1.71
CD44-219ENST00000525685 KIF28PB7ZC32 967 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TISP43B9A030 160 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3LB9A6J9 549 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TMEM232C9JQI7 657 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 CTIFO43310 598 aaKnown RBP4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3HP0C7X1 549 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 THBS4P35443 961 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 VPS41P49754 854 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 GPC5P78333 572 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 CFHR3Q02985 330 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 DNASE1L3Q13609 305 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 FHL3Q13643 280 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 DHX8Q14562 1220 aaKnown RBP4.37□□□□□ -1.71
CD44-219ENST00000525685 FAM187BQ17R55 369 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TUBB8Q3ZCM7 444 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 PRAMEF17Q5VTA0 474 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3GQ6DHY5 549 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 TBC1D3CQ6IPX1 549 aa4.37□□□□□ -1.71
CD44-219ENST00000525685 ERAP2Q6P179 960 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms