RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 HLA-EP13747 358 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 SLC9A1P19634 815 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 PON1P27169 355 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 CD70P32970 193 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 ZNF423Q2M1K9 1284 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 HNRNPA1L2Q32P51 320 aaKnown RBP14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 DCAF6Q58WW2 860 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 NADSYN1Q6IA69 706 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 LRSAM1Q6UWE0 723 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 C11orf57Q6ZUT1 292 aaPredicted RBP14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 CHSY1Q86X52 802 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 CARNMT1Q8N4J0 409 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 C1orf131Q8NDD1 294 aaKnown RBP14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 LMLNQ96KR4 655 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 PRICKLE1Q96MT3 831 aaPredicted RBP14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 RSPH9Q9H1X1 276 aaPredicted RBP14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 FAM204AQ9H8W3 233 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 PAXBP1Q9Y5B6 917 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 PCDHB9Q9Y5E1 797 aa14.93□□□□□ -0.02
HMGCS1-203ENST00000507004 A0A1B0GVM2 712 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 TCAF2A6NFQ2 919 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 BECN2A8MW95 431 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 KCNU1A8MYU2 1149 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 GIPC1O14908 333 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 SEMA4FO95754 770 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 MOCS2O96007 188 aaPredicted RBP14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 TACR2P21452 398 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 CSKP41240 450 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 VASPP50552 380 aaPredicted RBP14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 SGSHP51688 502 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 AFF3P51826 1226 aaKnown RBP14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 RPS14P62263 151 aaKnown RBP14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 RPS24P62847 133 aaKnown RBP14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 FOXC1Q12948 553 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 GRIK2Q13002 908 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 EIF4EBP2Q13542 120 aaPredicted RBP14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 ZC3H12AQ5D1E8 599 aaKnown RBP14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 SYPL2Q5VXT5 272 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 LGI2Q8N0V4 545 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 MSANTD4Q8NCY6 345 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 ZNF397Q8NF99 534 aaPredicted RBP14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 RNF34Q969K3 372 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 SKA1Q96BD8 255 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 ERLEC1Q96DZ1 483 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 SLC2A13Q96QE2 648 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 NUCKS1Q9H1E3 243 aaKnown RBP14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 MIR1-1HGQ9H1L0 117 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 NDST4Q9H3R1 872 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 SYNCQ9H7C4 482 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 CD93Q9NPY3 652 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 DNAJC12Q9UKB3 198 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 PCDHGB2Q9Y5G2 931 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 PCDH15Q96QU1 1955 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 ITIH6Q6UXX5 1313 aa14.92□□□□□ -0.02
HMGCS1-203ENST00000507004 EDDM13A0A1B0GTR0 161 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 DFNA5O60443 496 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 GJB3O75712 270 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 PROS1P07225 676 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 MAOBP27338 520 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 NOS2P35228 1153 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 SCNN1AP37088 669 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 MATKP42679 507 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 PLK1P53350 603 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 SIM1P81133 766 aaPredicted RBP14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 ECT2LQ008S8 904 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 SUZ12Q15022 739 aaKnown RBP14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 VWA3BQ502W6 1294 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 PITRM1Q5JRX3 1037 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 SLC26A9Q7LBE3 791 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 IRF2BP1Q8IU81 584 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 ZCCHC9Q8N567 271 aaKnown RBP14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 TMEM35BQ8NCS4 154 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 ADAM32Q8TC27 787 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 WFDC5Q8TCV5 224 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 NUP62CLQ9H1M0 184 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 PDCL3Q9H2J4 239 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 DDIT4Q9NX09 232 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 EIF2B4Q9UI10 523 aaKnown RBP14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 FZD4Q9ULV1 537 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 STAP1Q9ULZ2 295 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 ERVW-1Q9UQF0 538 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 ZBTB32Q9Y2Y4 487 aaPredicted RBP14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 DAAM1Q9Y4D1 1078 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 NEUROG3Q9Y4Z2 214 aa14.91□□□□□ -0.02
HMGCS1-203ENST00000507004 F9P00740 461 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 CALCAP01258 141 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 CD59P13987 128 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 EEF1GP26641 437 aaKnown RBP14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 CD27P26842 260 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 GRIA4P48058 902 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 SLC6A3Q01959 620 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 RAP1GAP2Q684P5 730 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 OR6B2Q6IFH4 312 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 GJB7Q6PEY0 223 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 SND1Q7KZF4 910 aaKnown RBP eCLIP14.9□□□□□ -0.022e-6■■■■□ 23.3
HMGCS1-203ENST00000507004 DSG4Q86SJ6 1040 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 FAM71AQ8IYT1 594 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 DEFB106AQ8N104 65 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 CPXM1Q96SM3 734 aa14.9□□□□□ -0.02
HMGCS1-203ENST00000507004 TUBGCP2Q9BSJ2 902 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms