RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 CDY2AQ9Y6F7 541 aa14.02□□□□□ -0.16
COL6A3-207ENST00000433762 CDY1Q9Y6F8 540 aa14.02□□□□□ -0.16
COL6A3-207ENST00000433762 COL4A4P53420 1690 aaPredicted RBP14.02□□□□□ -0.16
COL6A3-207ENST00000433762 MYO18AQ92614 2054 aaKnown RBP14.02□□□□□ -0.17
COL6A3-207ENST00000433762 DCLK1O15075 740 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 GPR32O75388 356 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 USP1O94782 785 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 MAP3K6O95382 1288 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 APOA4P06727 396 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 LCP1P13796 627 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 ANPEPP15144 967 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 MGAT1P26572 445 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 CRABP2P29373 138 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 ALDH18A1P54886 795 aaKnown RBP14.02□□□□□ -0.17
COL6A3-207ENST00000433762 CSE1LP55060 971 aaKnown RBP14.02□□□□□ -0.17
COL6A3-207ENST00000433762 SNAPC2Q13487 334 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 HIC1Q14526 733 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 CASC4Q6P4E1 433 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 TMEM135Q86UB9 458 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 DEFB106AQ8N104 65 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 CCDC33Q8N5R6 958 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 ZNF778Q96MU6 729 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 PANX3Q96QZ0 392 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 VAT1Q99536 393 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 RBBP8Q99708 897 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 VCX3BQ9H321 246 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 NDE1Q9NXR1 346 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 NSMCE4AQ9NXX6 385 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 PDP2Q9P2J9 529 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 PCDHB12Q9Y5F1 795 aa14.02□□□□□ -0.17
COL6A3-207ENST00000433762 SLC22A2O15244 555 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 NEBLO76041 1014 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 RECQL4O94761 1208 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 AP2A1O95782 977 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 DARSP14868 501 aaKnown RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ACAT1P24752 427 aaKnown RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ADORA2BP29275 332 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 COPAP53621 1224 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 LIMK2P53671 638 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ABCE1P61221 599 aaKnown RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 PDE1BQ01064 536 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 IFRD2Q12894 506 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 FSCBQ5H9T9 825 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 OTUD1Q5VV17 481 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 PGM2L1Q6PCE3 622 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 RASSF3Q86WH2 238 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 C7orf31Q8N865 590 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ACTRT2Q8TDY3 377 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 GATA6Q92908 595 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 WNT8BQ93098 351 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 OPTNQ96CV9 577 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 PGAP3Q96FM1 320 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 TRAPPC9Q96Q05 1148 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 PPP1R16BQ96T49 567 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 SORT1Q99523 831 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 KRT82Q9NSB4 513 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ZDHHC7Q9NXF8 308 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 TRHDEQ9UKU6 1024 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 SSX2IPQ9Y2D8 614 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ASB3Q9Y575 518 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 NRCAMQ92823 1304 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ZNF638Q14966 1978 aaKnown RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 MBLAC1A4D2B0 266 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 DPPA5A6NC42 116 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ZNF195O14628 629 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 PRKCGP05129 697 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ADORA2AP29274 412 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 NUMBP49757 651 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ATXN1P54253 815 aaKnown RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 SESN3P58005 492 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 IRX4P78413 519 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 KDSRQ06136 332 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ZNF33AQ06730 810 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 HNRNPDQ14103 355 aaKnown RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 RCN2Q14257 317 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 IQSEC1Q6DN90 963 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 KLHDC8BQ8IXV7 354 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ZNF567Q8N184 647 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 SLC7A14Q8TBB6 771 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 RDH11Q8TC12 318 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 SLC2A14Q8TDB8 520 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 ZC3H15Q8WU90 426 aaKnown RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 CDCA5Q96FF9 252 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 LGMNQ99538 433 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 EBF4Q9BQW3 602 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 THTPAQ9BU02 230 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 CASS4Q9NQ75 786 aa14.01□□□□□ -0.17
COL6A3-207ENST00000433762 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.01□□□□□ -0.17
COL6A3-207ENST00000433762 A0A088AWK7 358 aa14□□□□□ -0.17
COL6A3-207ENST00000433762 GLTPD2A6NH11 291 aa14□□□□□ -0.17
COL6A3-207ENST00000433762 HUS1O60921 280 aa14□□□□□ -0.17
COL6A3-207ENST00000433762 SIN3BO75182 1162 aa14□□□□□ -0.17
COL6A3-207ENST00000433762 RALBP11234 206 aa14□□□□□ -0.17
COL6A3-207ENST00000433762 NPR3P17342 541 aa14□□□□□ -0.17
COL6A3-207ENST00000433762 SP100P23497 879 aaPredicted RBP14□□□□□ -0.17
COL6A3-207ENST00000433762 PSMB4P28070 264 aa14□□□□□ -0.17
COL6A3-207ENST00000433762 TYK2P29597 1187 aa14□□□□□ -0.17
COL6A3-207ENST00000433762 LRPAP1P30533 357 aa14□□□□□ -0.17
COL6A3-207ENST00000433762 RPL10AP62906 217 aaKnown RBP14□□□□□ -0.17
COL6A3-207ENST00000433762 SEMA3BQ13214 749 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms