RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 SENP8Q96LD8 212 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 NDNQ99608 321 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 RMND5AQ9H871 391 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 VPS45Q9NRW7 570 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 HSD17B3P37058 310 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 AQP5P55064 265 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 TRIM25Q14258 630 aaKnown RBP13.44□□□□□ -0.26
SPG11-202ENST00000427534 AGKQ53H12 422 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 ATG16L2Q8NAA4 619 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 PAWRQ96IZ0 340 aaKnown RBP13.44□□□□□ -0.26
SPG11-202ENST00000427534 KCTD14Q9BQ13 255 aaPredicted RBP13.44□□□□□ -0.26
SPG11-202ENST00000427534 TBL1YQ9BQ87 522 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 MID1IP1Q9NPA3 183 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 FFAR3O14843 346 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 GPR42O15529 346 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 HMGCRP04035 888 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 CYP2A7P20853 494 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 FGFR3P22607 806 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 ZNF470Q6ECI4 717 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 ATP6V1C2Q8NEY4 427 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 ACAT2Q9BWD1 397 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 ABHD16BQ9H3Z7 469 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 KLC4Q9NSK0 619 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 ITGA11Q9UKX5 1188 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 TMCC3Q9ULS5 477 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 BARX2Q9UMQ3 279 aaPredicted RBP13.44□□□□□ -0.26
SPG11-202ENST00000427534 SIK3Q9Y2K2 1263 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 KLHL20Q9Y2M5 609 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.44□□□□□ -0.26
SPG11-202ENST00000427534 PCDHB9Q9Y5E1 797 aa13.44□□□□□ -0.26
SPG11-202ENST00000427534 A0A0A6YYK5 440 aaPredicted RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 TRAV19A0A0A6YYK7 116 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 VIL1P09327 827 aaKnown RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 DDR1Q08345 913 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 SLC41A1Q8IVJ1 513 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 ZNF558Q96NG5 402 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 OSBPL6Q9BZF3 934 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 ZSCAN5DPP0CG00 497 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 KCNA3P22001 575 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 RUNX1T1Q06455 604 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 PMM1Q92871 262 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 CMTM5Q96DZ9 223 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 GOLGA2P5Q9HBQ8 144 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 A1CFQ9NQ94 594 aaKnown RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 LYVE1Q9Y5Y7 322 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 PXDNQ92626 1479 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 FIGNQ5HY92 759 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 FAM228AQ86W67 206 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 PARP8Q8N3A8 854 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 PAFAH2Q99487 392 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 ACSS2Q9NR19 701 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 PAIP2BQ9ULR5 123 aaKnown RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 COL5A2P05997 1499 aaPredicted RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 OPLAHO14841 1288 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 APOA1P02647 267 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 GPR1P46091 355 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 ICE2Q659A1 982 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 PSRC1Q6PGN9 363 aaPredicted RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 EFCAB3Q8N7B9 438 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 CAMKK2Q96RR4 588 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 GAS2L1Q99501 681 aaPredicted RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 NLNQ9BYT8 704 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 ASAH2Q9NR71 780 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 CDY1Q9Y6F8 540 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 GRIK3Q13003 919 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 OTUD3Q5T2D3 398 aaPredicted RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 TTC7BQ86TV6 843 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 EPHX4Q8IUS5 362 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 RNASE11Q8TAA1 199 aaKnown RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 POMKQ9H5K3 350 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 OSER1Q9NX31 292 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 CAPN6Q9Y6Q1 641 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 SLIT1O75093 1534 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 SALL1Q9NSC2 1324 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3DA0A087WVF3 549 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3IA0A087WXS9 549 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3EA0A087X179 549 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3KA0A087X1G2 549 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 A0A0B4J269 797 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3FA6NER0 549 aaPredicted RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3LB9A6J9 549 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3HP0C7X1 549 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3GQ6DHY5 549 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3CQ6IPX1 549 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 LRRC34Q8IZ02 419 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 TBC1D3Q8IZP1 549 aaPredicted RBP13.43□□□□□ -0.26
SPG11-202ENST00000427534 DEFB119Q8N690 84 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 C12orf29Q8N999 325 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 WDR41Q9HAD4 459 aa13.43□□□□□ -0.26
SPG11-202ENST00000427534 PSTPIP1O43586 416 aa13.42□□□□□ -0.26
SPG11-202ENST00000427534 DLGAP3O95886 979 aa13.42□□□□□ -0.26
SPG11-202ENST00000427534 EPORP19235 508 aa13.42□□□□□ -0.26
SPG11-202ENST00000427534 CDKAL1Q5VV42 579 aa13.42□□□□□ -0.26
SPG11-202ENST00000427534 ZNF621Q6ZSS3 439 aa13.42□□□□□ -0.26
SPG11-202ENST00000427534 LRRC8DQ7L1W4 858 aa13.42□□□□□ -0.26
SPG11-202ENST00000427534 CNPY4Q8N129 248 aa13.42□□□□□ -0.26
SPG11-202ENST00000427534 UBE2OQ9C0C9 1292 aaKnown RBP13.42□□□□□ -0.26
SPG11-202ENST00000427534 FBXO44Q9H4M3 255 aa13.42□□□□□ -0.26
SPG11-202ENST00000427534 LRRC40Q9H9A6 602 aa13.42□□□□□ -0.26
SPG11-202ENST00000427534 KRCC1Q9NPI7 259 aaPredicted RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms