RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.52□□□□□ -0.89
COL28A1-201ENST00000399429 USP18Q9UMW8 372 aa9.52□□□□□ -0.89
COL28A1-201ENST00000399429 TRDMT1O14717 391 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 EIF2S1P05198 315 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ADRB2P07550 413 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 PSAPP07602 524 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ERVK-10P10266 1014 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 GSSP48637 474 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ARHGDIAP52565 204 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 GDF10P55107 478 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 IMPG1Q17R60 797 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 SAMD4BQ5PRF9 694 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 C6orf10Q5SRN2 563 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 BROXQ5VW32 411 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 SLFN12LQ6IEE8 588 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 RWDD4Q6NW29 188 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 SLC2A7Q6PXP3 512 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 CRTC3Q6UUV7 619 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 CMC1Q7Z7K0 106 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 DCAKDQ8WVC6 231 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 LPGAT1Q92604 370 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 RORBQ92753 470 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 APBB2Q92870 758 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 MAGED4Q96JG8 741 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 HERC2P3Q9BVR0 1158 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 C1orf21Q9H246 121 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 FANCEQ9HB96 536 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 GABBR1Q9UBS5 961 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 PCDHA2Q9Y5H9 948 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 CENPXA8MT69 81 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 LDLRP01130 860 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ARP10275 920 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 LRPAP1P30533 357 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 GRIA2P42262 883 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 GABRB2P47870 512 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 RPL14P50914 215 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 PRKAA1Q13131 559 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 FAM83EQ2M2I3 478 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ANKDD1AQ495B1 522 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 FBXL19Q6PCT2 694 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 APBA2Q99767 749 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 SMARCAD1Q9H4L7 1026 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 STN1Q9H668 368 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 EML4Q9HC35 981 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 EXOSC4Q9NPD3 245 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 XPNPEP3Q9NQH7 507 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 WDR70Q9NW82 654 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ANGPTL3Q9Y5C1 460 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 TCRBV7S3A2A0A539 114 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 GOLGA8CPA6NN73 597 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 CCRL2O00421 344 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 HDAC3O15379 428 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 CLIC3O95833 236 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 MT-ND1P03886 318 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 AOC1P19801 751 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 TGM2P21980 687 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 IVDP26440 423 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 SOX10P56693 466 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 TGFBIQ15582 683 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 MAPRE1Q15691 268 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 BMT2Q1RMZ1 405 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 PPM1JQ5JR12 505 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 CHST15Q7LFX5 561 aaPredicted RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ZBTB8OSQ8IWT0 167 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 UBA3Q8TBC4 463 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 APOL2Q9BQE5 337 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 PTPRHQ9HD43 1115 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 FAM49BQ9NUQ9 324 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 SCN3BQ9NY72 215 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 SRP68Q9UHB9 627 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 NOCTQ9UK39 431 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 PREX1Q8TCU6 1659 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 TMEM63AO94886 807 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ALDH4A1P30038 563 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 NKX2-5P52952 324 aaPredicted RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 GPSM2P81274 684 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 IL5RAQ01344 420 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 MMRN1Q13201 1228 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 DPYSQ14117 519 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 DUS1LQ6P1R4 473 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 DENND1BQ6P3S1 775 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ADGRG6Q86SQ4 1221 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 NAT16Q8N8M0 369 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 MCRS1Q96EZ8 462 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 ASPSCR1Q9BZE9 553 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 NMRAL1Q9HBL8 299 aa9.51□□□□□ -0.89
COL28A1-201ENST00000399429 RPRD1BQ9NQG5 326 aaKnown RBP9.51□□□□□ -0.89
COL28A1-201ENST00000399429 LMTK3Q96Q04 1460 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 CLUHO75153 1309 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 UBAP1LF5GYI3 381 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 APOC4-APOC2K7ER74 178 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 USP12O75317 370 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 APOC2P02655 101 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SERPINB2P05120 415 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 FGRP09769 529 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 KDELR1P24390 212 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 CCND2P30279 289 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 GCNT1Q02742 428 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 CTC1Q2NKJ3 1217 aa9.5□□□□□ -0.89
COL28A1-201ENST00000399429 SWSAP1Q6NVH7 229 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms