RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 DDR2Q16832 855 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 PREPLQ4J6C6 727 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 CCDC157Q569K6 752 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 EARS2Q5JPH6 523 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC44A2Q8IWA5 706 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 RAET1EQ8TD07 263 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ASB2Q96Q27 587 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 NMRAL1Q9HBL8 299 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 NT5MQ9NPB1 228 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 SALL1Q9NSC2 1324 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 PNMA8CA0A1B0GUJ8 204 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 APOC4-APOC2K7ER74 178 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 STK25O00506 426 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 APOC2P02655 101 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 TTKP33981 857 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ARL4DP49703 201 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 MSLNQ13421 630 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 OTUD3Q5T2D3 398 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF618Q5T7W0 954 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ANKS6Q68DC2 871 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 B3GNT6Q6ZMB0 384 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 RNF19BQ6ZMZ0 732 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 C11orf96Q7Z7L8 435 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 C11orf74Q86VG3 221 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF398Q8TD17 642 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ZKSCAN4Q969J2 545 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 L3MBTL3Q96JM7 780 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 CDRT15Q96T59 188 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 UGT2B28Q9BY64 529 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 INTS13Q9NVM9 706 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF180Q9UJW8 692 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 DYRK1BQ9Y463 629 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 A0A087X0B3 334 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 RAD51BO15315 384 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 DCXO43602 365 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ATG7O95352 703 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 MT-CO1P00395 513 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ALOX12P18054 663 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 MGAT1P26572 445 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 CCNG1P51959 295 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 CAMK2GQ13555 558 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 RNF43Q68DV7 783 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ERAP2Q6P179 960 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 B3GALNT2Q8NCR0 500 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 PXMP2Q9NR77 195 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 BLOC1S4Q9NUP1 217 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF446Q9NWS9 450 aa10.46□□□□□ -0.73
LIMCH1-203ENST00000396595 TCRBV5S4A2TA0A5A2 114 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 CCDC189A1A4V9 331 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 WDR27A2RRH5 827 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 H7C4K7 107 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 EGFRP00533 1210 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 PAEPP09466 180 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 TKTL1P51854 596 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 EPS8Q12929 822 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 GNASQ5JWF2 1037 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 ZNF662Q6ZS27 426 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 PTAR1Q7Z6K3 402 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 FBXO39Q8N4B4 442 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 TSPAN16Q9UKR8 245 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 SPACA6W5XKT8 324 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 ARPC4-TTLL3A0A0A6YYG9 625 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 GNG14A0A1W2PPG7 69 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 H7C0S8 307 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 GPR182O15218 404 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 UNC5CO95185 931 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 HSMCR30P0CW71 290 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 SLC2A4P14672 509 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 MSH3P20585 1137 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 NFIAQ12857 509 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 POU6F1Q14863 301 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 FBXO47Q5MNV8 452 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 MARC1Q5VT66 337 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 ANKRD13AQ8IZ07 590 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 ZSWIM2Q8NEG5 633 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 SYTL5Q8TDW5 730 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 FAM136AQ96C01 138 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 PHF21BQ96EK2 531 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 DCUN1D5Q9BTE7 237 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 KIFC1Q9BW19 673 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 HMG20AQ9NP66 347 aa10.46□□□□□ -0.74
LIMCH1-203ENST00000396595 FAM220BPB1ANY3 271 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 CYP1A1P04798 512 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 CETPP11597 493 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ETS1P14921 441 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 RXRGP48443 463 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 GMPSP49915 693 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ITGADQ13349 1161 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 DGUOKQ16854 277 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 CHMP1BQ7LBR1 199 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 NIPA1Q7RTP0 329 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 STK32CQ86UX6 486 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 PRDM16Q9HAZ2 1276 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 CHST7Q9NS84 486 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 ATXN10Q9UBB4 475 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 PROCP04070 461 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 CXCL8P10145 99 aa10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 EIF4BP23588 611 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-203ENST00000396595 GCLCP48506 637 aaPredicted RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms