RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 GPR180Q86V85 440 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 PLD6Q8N2A8 252 aaKnown RBP13.82□□□□□ -0.2
SKA3-201ENST00000298260 KYQ8NBH2 561 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 PEBP4Q96S96 227 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 HNRNPABQ99729 332 aaKnown RBP13.82□□□□□ -0.2
SKA3-201ENST00000298260 RTKNQ9BST9 563 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 KLC2Q9H0B6 622 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 NOL11Q9H8H0 719 aaKnown RBP13.82□□□□□ -0.2
SKA3-201ENST00000298260 C20orf96Q9NUD7 363 aaPredicted RBP13.82□□□□□ -0.2
SKA3-201ENST00000298260 ZNHIT2Q9UHR6 403 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 VPS51Q9UID3 782 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 MYRFQ9Y2G1 1151 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 PRSS51A0A1B0GVH4 220 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 GIPC1O14908 333 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 SERPINE1P05121 402 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 KRT3P12035 628 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 HDCP19113 662 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 EPHX2P34913 555 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 CDH6P55285 790 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 EGFLAMQ63HQ2 1017 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 NXNQ6DKJ4 435 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 CROCCP3Q8IVE0 287 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 HAUS8Q9BT25 410 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 MAGEB5Q9BZ81 275 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.82□□□□□ -0.2
SKA3-201ENST00000298260 ADA2Q9NZK5 511 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 MAGED2Q9UNF1 606 aaPredicted RBP13.82□□□□□ -0.2
SKA3-201ENST00000298260 EXOC7Q9UPT5 735 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 ZNF831Q5JPB2 1677 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 APOC4-APOC2K7ER74 178 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 RAD17O75943 681 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 METTL18O95568 372 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 ZBED1O96006 694 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 APOC2P02655 101 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 IKBKEQ14164 716 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 DLG2Q15700 870 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 AARS2Q5JTZ9 985 aaKnown RBP13.82□□□□□ -0.2
SKA3-201ENST00000298260 DENND1BQ6P3S1 775 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 DPH6Q7L8W6 267 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 GPR141Q7Z602 305 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 PQLC3Q8N755 202 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 TANKQ92844 425 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 WDR41Q9HAD4 459 aa13.82□□□□□ -0.2
SKA3-201ENST00000298260 KIAA1522Q9P206 1035 aaPredicted RBP13.82□□□□□ -0.2
SKA3-201ENST00000298260 WDR27A2RRH5 827 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 CSDE1O75534 798 aaKnown RBP13.81□□□□□ -0.2
SKA3-201ENST00000298260 HSPA4LO95757 839 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 MAPTP10636 758 aaKnown RBP13.81□□□□□ -0.2
SKA3-201ENST00000298260 MPSTP25325 297 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 YAP1P46937 504 aaKnown RBP13.81□□□□□ -0.2
SKA3-201ENST00000298260 ITGADQ13349 1161 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 Q3C1V9 767 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 CRY2Q49AN0 593 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 TBC1D15Q8TC07 691 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 CCDC17Q96LX7 622 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 BIRC8Q96P09 236 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 DBNDD1Q9H9R9 158 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 TRPC7Q9HCX4 862 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 DNAJC28Q9NX36 388 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 PPEF1O14829 653 aaPredicted RBP13.81□□□□□ -0.2
SKA3-201ENST00000298260 CD19P15391 556 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 ZNF182P17025 639 aaPredicted RBP13.81□□□□□ -0.2
SKA3-201ENST00000298260 PTPN7P35236 360 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 BMXP51813 675 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 NUP107P57740 925 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 FSTL1Q12841 308 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 DHRS4L2Q6PKH6 230 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 BTLAQ7Z6A9 289 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 SETD3Q86TU7 594 aaPredicted RBP13.81□□□□□ -0.2
SKA3-201ENST00000298260 DDHD1Q8NEL9 900 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 GFM2Q969S9 779 aaKnown RBP13.81□□□□□ -0.2
SKA3-201ENST00000298260 VPS50Q96JG6 964 aa13.81□□□□□ -0.2
SKA3-201ENST00000298260 INO80BQ9C086 356 aaPredicted RBP13.81□□□□□ -0.2
SKA3-201ENST00000298260 FAM32AQ9Y421 112 aaKnown RBP13.81□□□□□ -0.2
SKA3-201ENST00000298260 SAC3D1A6NKF1 404 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 CCNE2O96020 404 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 LTFP02788 710 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 CSE1LP55060 971 aaKnown RBP13.8□□□□□ -0.2
SKA3-201ENST00000298260 PSMC1P62191 440 aaKnown RBP13.8□□□□□ -0.2
SKA3-201ENST00000298260 PMS2P3Q13401 168 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 C15orf59Q2T9L4 293 aaPredicted RBP13.8□□□□□ -0.2
SKA3-201ENST00000298260 ZNF534Q76KX8 674 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 LYSMD3Q7Z3D4 306 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 CARM1Q86X55 608 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 SLC15A4Q8N697 577 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 PPWD1Q96BP3 646 aaKnown RBP13.8□□□□□ -0.2
SKA3-201ENST00000298260 SIGLEC10Q96LC7 697 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 AGAP3Q96P47 875 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 CEP41Q9BYV8 373 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 UNKQ9C0B0 810 aaKnown RBP13.8□□□□□ -0.2
SKA3-201ENST00000298260 CAB39LQ9H9S4 337 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 TCF7L2Q9NQB0 619 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 XPNPEP3Q9NQH7 507 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 IGSF9Q9P2J2 1179 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 COPG2Q9UBF2 871 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 FAM149AA5PLN7 773 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 H3BMQ9 156 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 MATN2O00339 956 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 NFIBO00712 420 aa13.8□□□□□ -0.2
SKA3-201ENST00000298260 KCNH1O95259 989 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms